GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003371-TA|BGIBMGA003371-PA|undefined
         (309 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    24   1.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.9  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 4/22 (18%)

Query: 177 RHQVGVIANRYIELNPNWTKPK 198
           RHQ    ++RY +L  NW KPK
Sbjct: 21  RHQ----SDRYSKLKRNWRKPK 38


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 103 LRSARTIAMLQIPLEKLVATWY--VVKQDRPTSTISYRVLELYRPLFKHLSGREMAKLNL 160
           L+   TI M++ P +K    W   +     PTST S    EL + L   L+  +M  + L
Sbjct: 339 LKYLPTILMMRRP-KKTRLRWMMEIPNVTLPTSTYSGSPTELPKHLPTSLTKSKMEVMEL 397

Query: 161 SD 162
           SD
Sbjct: 398 SD 399


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.138    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,336
Number of Sequences: 429
Number of extensions: 4967
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 309
length of database: 140,377
effective HSP length: 58
effective length of query: 251
effective length of database: 115,495
effective search space: 28989245
effective search space used: 28989245
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)