GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003369-TA|BGIBMGA003369-PA|IPR002110|Ankyrin,
IPR005821|Ion transport
         (813 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    26   1.1  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   7.5  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 758 RALVLRINQKDEDKEEMKEILEMKRTHERIVAKRKQREALKPGEI 802
           R L++   +KDED+EE +E++ + R    + A     EA+  GE+
Sbjct: 347 RFLLIERPKKDEDEEEEEEVVVVGRNGAGVGAMNANGEAV--GEV 389


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 662 FLMSLTSFSDYYTAFDRTDH 681
           FL  + +  DYY   + TDH
Sbjct: 280 FLHKMKNIIDYYLVLENTDH 299


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.138    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,151
Number of Sequences: 429
Number of extensions: 10162
Number of successful extensions: 22
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 2
length of query: 813
length of database: 140,377
effective HSP length: 63
effective length of query: 750
effective length of database: 113,350
effective search space: 85012500
effective search space used: 85012500
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 47 (23.0 bits)