GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003364-TA|BGIBMGA003364-PA|IPR002198|Short-chain
dehydrogenase/reductase SDR, IPR002347|Glucose/ribitol dehydrogenase
         (193 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    26   0.20 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    25   0.36 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.7  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
          dehydrogenase/reductase protein.
          Length = 246

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 15 VGKTALITGCNTGIGKETALDFYKRGARVI 44
          + + AL+TG N+GIGK        +G +VI
Sbjct: 6  IDEVALVTGANSGIGKCLIECLVGKGMKVI 35


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
          protein MRJP2 protein.
          Length = 452

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 45 MACRSLERAEEAKADIEKSCNNINETGHLEYD 76
          +AC+     E +  ++EKS N I+E  + +YD
Sbjct: 13 IACQGAIVRENSPRNLEKSLNVIHEWKYFDYD 44


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/20 (50%), Positives = 11/20 (55%)

Query: 2   PLFSGRCLSTVKLVGKTALI 21
           P FSG    T  LVGKT  +
Sbjct: 926 PAFSGTSSPTNSLVGKTVAV 945



 Score = 21.8 bits (44), Expect = 4.4
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 17  KTALITGCNTGIGKETALDFYKRGARVIMACRSLERAEEAKADIEKSCNNI 67
           K A   GC++  G+ T+  F +  A    +   LERA  A +      N++
Sbjct: 888 KPASTPGCSSKNGEPTSAAFAQGFATAASSPGLLERASPAFSGTSSPTNSL 938


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 149 AVTNPAKVINEENAQKLW 166
           AVT P K    +N +++W
Sbjct: 287 AVTQPIKYAKHKNNRRVW 304


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,993
Number of Sequences: 429
Number of extensions: 2127
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 193
length of database: 140,377
effective HSP length: 54
effective length of query: 139
effective length of database: 117,211
effective search space: 16292329
effective search space used: 16292329
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)