GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003362-TA|BGIBMGA003362-
PA|IPR004820|Cytidylyltransferase,
IPR004821|Cytidyltransferase-related
         (342 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    24   1.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.8  

>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 272 ENGDHSPLYRSSVSPPPAKARRR-EPDWE 299
           E G++ P+Y S   PP  + RR  EP+ E
Sbjct: 96  EPGNNRPVYISQPRPPHPRLRREAEPEAE 124



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 272 ENGDHSPLYRSSVSPPPAKARRR-EPDWE 299
           E G++ P+Y S   PP  + RR  EP+ E
Sbjct: 152 EPGNNRPVYISQPRPPHPRLRREAEPEAE 180


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)

Query: 221 KWEEKSRELIDAFLLLFGPDGRL 243
           KWE  +REL D       PDG L
Sbjct: 551 KWERANRELPDDLRQKVLPDGTL 573


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)

Query: 221 KWEEKSRELIDAFLLLFGPDGRL 243
           KWE  +REL D       PDG L
Sbjct: 551 KWERANRELPDDLRQKVLPDGTL 573


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.133    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,921
Number of Sequences: 429
Number of extensions: 3677
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 342
length of database: 140,377
effective HSP length: 58
effective length of query: 284
effective length of database: 115,495
effective search space: 32800580
effective search space used: 32800580
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)