GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003360-TA|BGIBMGA003360-PA|IPR000195|RabGAP/TBC
         (225 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    25   0.44 
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   5.4  
AY569719-1|AAS86672.1|  401|Apis mellifera complementary sex det...    21   7.1  
AY569718-1|AAS86671.1|  401|Apis mellifera complementary sex det...    21   7.1  
AY569715-1|AAS86668.1|  401|Apis mellifera complementary sex det...    21   7.1  
AY569713-1|AAS86666.1|  401|Apis mellifera complementary sex det...    21   7.1  
AY569711-1|AAS86664.1|  401|Apis mellifera complementary sex det...    21   7.1  
AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex det...    21   7.1  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   7.1  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   9.4  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   9.4  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   9.4  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   9.4  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   9.4  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   9.4  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 10/59 (16%), Positives = 26/59 (44%)

Query: 153 LNYIAGLLLLATKSEETSFWLLKVLVEKILPDYYTKTMDGLIVDIEVLSELVKAKVPDV 211
           L + +G+ ++++K +    W+  +  +K +            +   ++ ELV+    DV
Sbjct: 356 LQFPSGMKIISSKKDRQELWIFTISFQKYMSGTLNSNETNFRIQAGLVDELVRGTKCDV 414


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 7   SAVDEYGFERHDDFDYESYEDFMSNYLKV 35
           S +  Y  + H+D   E YE     YL++
Sbjct: 148 SNITMYDLKSHNDIYCEKYEKNGETYLRI 176


>AY569719-1|AAS86672.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 164 TKSEETSFWLLKVLVEKILPDYYTKTMDGLIVDI 197
           T+   T    +KV + ++LP   T T D L  DI
Sbjct: 118 TQVSATELRKIKVDIHRVLPGKPTTTSDELKRDI 151


>AY569718-1|AAS86671.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 164 TKSEETSFWLLKVLVEKILPDYYTKTMDGLIVDI 197
           T+   T    +KV + ++LP   T T D L  DI
Sbjct: 118 TQVSATELRKIKVDIHRVLPGKPTTTSDELKRDI 151


>AY569715-1|AAS86668.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 164 TKSEETSFWLLKVLVEKILPDYYTKTMDGLIVDI 197
           T+   T    +KV + ++LP   T T D L  DI
Sbjct: 118 TQVSATELRKIKVDIHRVLPGKPTTTSDELKRDI 151


>AY569713-1|AAS86666.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 164 TKSEETSFWLLKVLVEKILPDYYTKTMDGLIVDI 197
           T+   T    +KV + ++LP   T T D L  DI
Sbjct: 118 TQVSATELRKIKVDIHRVLPGKPTTTSDELKRDI 151


>AY569711-1|AAS86664.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 164 TKSEETSFWLLKVLVEKILPDYYTKTMDGLIVDI 197
           T+   T    +KV + ++LP   T T D L  DI
Sbjct: 118 TQVSATELRKIKVDIHRVLPGKPTTTSDELKRDI 151


>AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 164 TKSEETSFWLLKVLVEKILPDYYTKTMDGLIVDI 197
           T+   T    +KV + ++LP   T T D L  DI
Sbjct: 118 TQVSATELRKIKVDIHRVLPGKPTTTSDELKRDI 151


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 164 TKSEETSFWLLKVLVEKILPDYYTKTMDGLIVDI 197
           T+   T    +KV + ++LP   T T D L  DI
Sbjct: 118 TQVSATELRKIKVDIHRVLPGKPTTTSDELKRDI 151


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
          determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 16 RHDDFDYESYEDFMSNYLKVLATRAQKWAALLGEGKSVKRTNTVKRY 62
          R  D  YE   +    +L+   +R +   +   E KS K  N+ ++Y
Sbjct: 13 RKKDRRYEKLHNEKEKFLEERTSRKRYSRSREREQKSYKNENSYRKY 59


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
          determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 16 RHDDFDYESYEDFMSNYLKVLATRAQKWAALLGEGKSVKRTNTVKRY 62
          R  D  YE   +    +L+   +R +   +   E KS K  N+ ++Y
Sbjct: 13 RKKDRRYEKLHNEKEKFLEERTSRKRYSRSREREQKSYKNENSYRKY 59


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
          determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 16 RHDDFDYESYEDFMSNYLKVLATRAQKWAALLGEGKSVKRTNTVKRY 62
          R  D  YE   +    +L+   +R +   +   E KS K  N+ ++Y
Sbjct: 13 RKKDRRYEKLHNEKEKFLEERTSRKRYSRSREREQKSYKNENSYRKY 59


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
          determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 16 RHDDFDYESYEDFMSNYLKVLATRAQKWAALLGEGKSVKRTNTVKRY 62
          R  D  YE   +    +L+   +R +   +   E KS K  N+ ++Y
Sbjct: 13 RKKDRRYEKLHNEKEKFLEERTSRKRYSRSREREQKSYKNENSYRKY 59


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
          determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 16 RHDDFDYESYEDFMSNYLKVLATRAQKWAALLGEGKSVKRTNTVKRY 62
          R  D  YE   +    +L+   +R +   +   E KS K  N+ ++Y
Sbjct: 13 RKKDRRYEKLHNEKEKFLEERTSRKRYSRSREREQKSYKNENSYRKY 59


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
          determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 16 RHDDFDYESYEDFMSNYLKVLATRAQKWAALLGEGKSVKRTNTVKRY 62
          R  D  YE   +    +L+   +R +   +   E KS K  N+ ++Y
Sbjct: 13 RKKDRRYEKLHNEKEKFLEERTSRKRYSRSREREQKSYKNENSYRKY 59


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,723
Number of Sequences: 429
Number of extensions: 3160
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of query: 225
length of database: 140,377
effective HSP length: 55
effective length of query: 170
effective length of database: 116,782
effective search space: 19852940
effective search space used: 19852940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)