GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003359-TA|BGIBMGA003359-PA|IPR003593|AAA ATPase,
IPR003439|ABC transporter related, IPR011527|ABC transporter,
transmembrane region, type 1, IPR001140|ABC transporter, transmembrane
region
         (760 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   5.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   5.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   9.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   9.3  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)

Query: 212 IVVGSVGSGKSTLL-HLILK 230
           +V+G V SGKST   HLI K
Sbjct: 11  VVIGHVDSGKSTTTGHLIYK 30


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)

Query: 212 IVVGSVGSGKSTLL-HLILK 230
           +V+G V SGKST   HLI K
Sbjct: 11  VVIGHVDSGKSTTTGHLIYK 30


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 495 WPSQGRIDFEDLSLKYSPDGNLVLHNLQ 522
           W    R   +DL  K  PDG LV+ ++Q
Sbjct: 552 WERANRELPDDLRQKVLPDGTLVITSVQ 579


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 495 WPSQGRIDFEDLSLKYSPDGNLVLHNLQ 522
           W    R   +DL  K  PDG LV+ ++Q
Sbjct: 552 WERANRELPDDLRQKVLPDGTLVITSVQ 579


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,485
Number of Sequences: 429
Number of extensions: 7939
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 6
length of query: 760
length of database: 140,377
effective HSP length: 63
effective length of query: 697
effective length of database: 113,350
effective search space: 79004950
effective search space used: 79004950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)