GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003355-TA|BGIBMGA003355-PA|IPR006762|Gtr1/RagA G protein
         (307 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   5.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.9  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   7.8  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/53 (22%), Positives = 26/53 (49%)

Query: 235 LSCSKLAAQFQSMEVRNSVFAAFIDGFTSNTYVMVEMSDPKIPSEATLINIRN 287
           +SCS   A++  + V+ ++ + FI+    ++ V+  + +P     A    I N
Sbjct: 433 MSCSDKIARWNVLGVQGALLSYFIEPIYFHSIVLGSLLNPSHMYRAVCGRIEN 485


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)

Query: 170 SIVYKLIPNVKALESSLKQFAAIVDADEVL 199
           ++VYKLI N+K     +      VD +E+L
Sbjct: 560 NVVYKLIDNIK---KEIYDILPEVDVEEIL 586


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/44 (20%), Positives = 21/44 (47%)

Query: 223 FEKVSNIVKQFKLSCSKLAAQFQSMEVRNSVFAAFIDGFTSNTY 266
           F ++++    +    +KL    +S  V+N ++   +   T+N Y
Sbjct: 226 FHRLTSNTFDYDPRYTKLTVAGESFTVKNGIYGIALSPVTNNLY 269


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.133    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,161
Number of Sequences: 429
Number of extensions: 3066
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 307
length of database: 140,377
effective HSP length: 58
effective length of query: 249
effective length of database: 115,495
effective search space: 28758255
effective search space used: 28758255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 44 (21.8 bits)