GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003354-TA|BGIBMGA003354-PA|IPR010285|Protein of unknown
function DUF889, eukaryote
         (675 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    31   0.031
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   8.2  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 31.1 bits (67), Expect = 0.031
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 49  GMYCSGGKVKIPLLGEPEEPLKSLLLYDSNESRRFLSRIRKYNS-CFQMTSFGVDKEVVM 107
           G  C G  +++P+ G      + +LL+  +   ++ S IR+ NS   ++    V KEV +
Sbjct: 42  GQVCLGSVMQLPIHGTEPRSKEEILLHAKDFLEQYFSSIRRLNSEAHRIRWESVQKEVTV 101

Query: 108 PG 109
            G
Sbjct: 102 TG 103


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 330 ERLRKDLSDYGMIRPQRTEEISSDLIRELDYDTASLQQQLTESVPRLIPEQRLVFDNVF 388
           ++LR++++ +    P+  +E+  D I+E++Y     ++ L    P  I  ++ + D  F
Sbjct: 328 KKLREEINTFC---PKNNKELKYDDIKEMEYLDKVFKETLRMYPPASILMRKAISDYTF 383


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,452
Number of Sequences: 429
Number of extensions: 9095
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 3
length of query: 675
length of database: 140,377
effective HSP length: 62
effective length of query: 613
effective length of database: 113,779
effective search space: 69746527
effective search space used: 69746527
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)