GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003345-TA|BGIBMGA003345-PA|IPR008965|Carbohydrate-
binding, IPR004272|Odorant binding protein, IPR013053|Hormone binding
         (264 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    87   1e-19
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   4.9  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   4.9  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   4.9  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 87.4 bits (207), Expect = 1e-19
 Identities = 55/219 (25%), Positives = 101/219 (46%), Gaps = 3/219 (1%)

Query: 46  CSRQDPNVD--ACLLRSFNNLVDYLKGGAPEMGIEEAEPIVIDELSIALGAGPDGYRATF 103
           C R  P  +   C+  +  + V  L GG     I   EP+ +D + I    G    R  +
Sbjct: 31  CDRSLPQKEYNQCIAEAVRDAVVSLAGGLKSFKILPIEPLAVDSVKIGESQGSVTLRQEY 90

Query: 104 KDIHASGAS-NMTITNVRSDLETHQFQLTLYGPHISARARYRSSGVLLLVRASGGGEYWG 162
           K+I   G + N+ I N   D +        Y P +   A Y+  G +LL+   G G+   
Sbjct: 91  KNIKLYGLTKNLEIKNYNIDWDKCILSSESYNPQVDFVADYKIEGKVLLLPVRGAGKSNI 150

Query: 163 EYHGVKAKVYFRGAPYERDGRTYLKLQQLKLDFSVKDIKMGVENLDNSNAVLQAALNLFI 222
             + +K+        YE++G TYL++++  + F+   +K+  ENL + N  L   +N FI
Sbjct: 151 TMYDLKSHNDIYCEKYEKNGETYLRIKKHAVKFNPAKVKLRFENLFDGNKELGEQMNRFI 210

Query: 223 STNAQELLKEMKPELKRDLADKMSRYLDHILQHIPYDEL 261
           + N++ L KE++   +   +   ++  + I   +P+D++
Sbjct: 211 NENSELLFKELQAAYEETFSLVFTKIDNEIFNRVPFDKI 249


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 50  DPNVDACLLRSFNNLVDYLKGGAPEMG 76
           DP +   LL+  N  V    GG P++G
Sbjct: 88  DPGMFPALLKDPNGNVVARNGGVPQLG 114


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/24 (33%), Positives = 17/24 (70%)

Query: 186 LKLQQLKLDFSVKDIKMGVENLDN 209
           +K+Q++ +DF V  +  GV N+++
Sbjct: 486 IKMQKVLIDFWVSFVNNGVPNVNS 509


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/24 (33%), Positives = 17/24 (70%)

Query: 186 LKLQQLKLDFSVKDIKMGVENLDN 209
           +K+Q++ +DF V  +  GV N+++
Sbjct: 486 IKMQKVLIDFWVSFVNNGVPNVNS 509


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,179
Number of Sequences: 429
Number of extensions: 2727
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 264
length of database: 140,377
effective HSP length: 57
effective length of query: 207
effective length of database: 115,924
effective search space: 23996268
effective search space used: 23996268
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)