GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003344-TA|BGIBMGA003344-PA|IPR004272|Odorant binding
protein
         (456 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   3.0  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   4.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   5.3  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 13/53 (24%), Positives = 25/53 (47%)

Query: 262 VSVFVVTLAETWVMGISSFQRVGNISLIMENNTAVADFEIGTQKLEGQTKWEI 314
           V+V VV      ++ +    ++ N++ +   + AVAD  +G   L     WE+
Sbjct: 75  VNVMVVLGNVLVILAVYHTSKLRNVTNMFIVSLAVADLMVGLAVLPFSATWEV 127


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)

Query: 155 RDGKIRAENIVMDLSASNIAVNL 177
           R  ++RAE+I M+   +NIAV+L
Sbjct: 175 RQYRLRAEDINMNTFIANIAVDL 197


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 155 RDGKIR----AENIVMDLSASNIAVNLENAEIISGFINTIGPFIFDSIKPYVLKEAYATI 210
           RD K++    + N + +LS  ++  ++E   I + +IN + P  F         + YA +
Sbjct: 593 RDSKVKTLDASHNRITELSPLSVPDSVELLFINNNYINLVRPNTFTDKVNLTRVDMYANM 652

Query: 211 KTTM 214
             TM
Sbjct: 653 IETM 656


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.136    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,321
Number of Sequences: 429
Number of extensions: 5042
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 3
length of query: 456
length of database: 140,377
effective HSP length: 60
effective length of query: 396
effective length of database: 114,637
effective search space: 45396252
effective search space used: 45396252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)