GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003338-TA|BGIBMGA003338-PA|IPR001209|Ribosomal protein
S14
         (114 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   2.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   3.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   3.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   3.6  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   6.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   6.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   6.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   6.3  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    20   6.3  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 8/34 (23%), Positives = 21/34 (61%)

Query: 31  ENFLERTRVNALRKNDILPVEIREIADKQINQFE 64
           + +++ +++  + K+DIL + I ++  KQ+   E
Sbjct: 349 QKYVKNSKLEKVIKHDILRMLIIDLRKKQLKSLE 382


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
          isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 9/12 (75%), Positives = 9/12 (75%)

Query: 39 VNALRKNDILPV 50
          VN L  NDILPV
Sbjct: 43 VNTLISNDILPV 54


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
          isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 9/12 (75%), Positives = 9/12 (75%)

Query: 39 VNALRKNDILPV 50
          VN L  NDILPV
Sbjct: 81 VNTLISNDILPV 92


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 34 LERTRVNALRKNDILPVEIR 53
          LE  RVN     ++LP+++R
Sbjct: 13 LENWRVNNSNYTELLPIDMR 32


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 64  EWNATPMRI 72
           EWNA P R+
Sbjct: 325 EWNAVPARV 333


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 64  EWNATPMRI 72
           EWNA P R+
Sbjct: 294 EWNAVPARV 302


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 64  EWNATPMRI 72
           EWNA P R+
Sbjct: 345 EWNAVPARV 353


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 64  EWNATPMRI 72
           EWNA P R+
Sbjct: 294 EWNAVPARV 302


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 3   TYFQYQQVRNKWANWLMIRDVKR 25
           T F YQ +RN+  N+ + +  KR
Sbjct: 281 TIFGYQDMRNRGNNFPVYQVEKR 303


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.135    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,952
Number of Sequences: 429
Number of extensions: 1312
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 114
length of database: 140,377
effective HSP length: 50
effective length of query: 64
effective length of database: 118,927
effective search space:  7611328
effective search space used:  7611328
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.2 bits)
S2: 39 (19.8 bits)