GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003336-TA|BGIBMGA003336-PA|IPR004971|mRNA capping
enzyme, large subunit
         (394 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    26   0.64 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   2.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   6.0  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 25.8 bits (54), Expect = 0.64
 Identities = 8/32 (25%), Positives = 19/32 (59%)

Query: 284 YKAGFDHFYKDHWENHKQLFQRIMCFETYPAP 315
           Y   ++++  +++ N+K+L+  I+  E  P P
Sbjct: 334 YNNNYNNYNNNNYNNYKKLYYNIINIEQIPVP 365


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 32/149 (21%), Positives = 59/149 (39%), Gaps = 9/149 (6%)

Query: 83  IREKDY-GRPLRILDICCGKGGDLSKWQKVRPEHAIFADIAEVSVQQCETRYEELRRRCG 141
           I E+ Y     R +D C  K   + K  ++ P   I   +    +++C  R+  +    G
Sbjct: 66  IHEESYLAESSRSIDPCASKYCGIGKECELSPNSTIAVCVC---MRKCPRRHRPVCASNG 122

Query: 142 RLFS--AEFIATDCTKDTLRDKYK-DPSISFDIVSCQFG--LHYSFESLPQARRMLTNIS 196
           ++++   E     C   +   K +    +  DI +      LH +  SL  ++ +    S
Sbjct: 123 KIYANHCELHRAACHSGSSLTKSRLMRCLHHDIENAHIRRTLHMNRTSLKTSKIVSYPKS 182

Query: 197 ECLKPGGYFFGTIPNANEIVSRAQKTQDY 225
              K GG     IP+ N+  S+    Q+Y
Sbjct: 183 RSRKKGGLKDNLIPDKNDPDSKECSNQEY 211


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 13  KQTENVDENKINANNSNHEPPPKKHSSVVAAHYNHLEEKGLKERYN 58
           + TE +++ +I ++NS      K+ + +V    N L E   KE+ N
Sbjct: 70  QDTEKLNQLEIESDNSKEVNDKKEENFIVDRLRNDLFECENKEKSN 115


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,680
Number of Sequences: 429
Number of extensions: 6823
Number of successful extensions: 26
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 3
length of query: 394
length of database: 140,377
effective HSP length: 59
effective length of query: 335
effective length of database: 115,066
effective search space: 38547110
effective search space used: 38547110
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)