GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003333-TA|BGIBMGA003333-PA|IPR006170|Pheromone/general
odorant binding protein, PBP/GOBP
         (361 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   1.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   5.4  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   7.1  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 50  ELRDAYSKCSTTPSMKQTQNSLPSYLSNLAPGFAMDPTQSNVKHTDGAIQNDENDLPNQE 109
           E  D+ S   T PS  Q      +Y  N+   F   P  + +  +D  I N  ND   + 
Sbjct: 528 EYYDSKSSTETPPSYNQL-----NYNENIERFFKSKPPVATMYGSDEEIINSSNDEGGKT 582

Query: 110 APQS 113
           +P S
Sbjct: 583 SPNS 586


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 52  RDAYSKCSTTPSMKQTQNSLPSYLSNLAPGFAMDPTQ 88
           RD +    TT +   T+  LP  +S L  G AM P++
Sbjct: 620 RDLHLGERTTLTCSVTRGDLPLSISWLKDGRAMGPSE 656


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 8/32 (25%), Positives = 16/32 (50%)

Query: 266 KRDIVARPQEQIRSIFFFRCYKHKKLEACIMK 297
           KRD+    ++ +  + F   +  K  + CI+K
Sbjct: 11  KRDVFIEKEQMMNILMFLPSWDGKMPQPCILK 42


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,264
Number of Sequences: 429
Number of extensions: 4708
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 4
length of query: 361
length of database: 140,377
effective HSP length: 59
effective length of query: 302
effective length of database: 115,066
effective search space: 34749932
effective search space used: 34749932
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)