GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003330-TA|BGIBMGA003330-PA|IPR001910|Inosine/uridine-
preferring nucleoside hydrolase
         (321 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    23   4.7  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   6.2  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   8.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   8.2  
AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.        22   8.2  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 12/55 (21%), Positives = 24/55 (43%)

Query: 258 AVVAIALDETIAEETVFSNNSVVLCGSNRGVVLNDFGSEPNVKLWYRLNMQKYKQ 312
           A  A   ++ +A E  F     +       + L+   +E  VK+W++    K+K+
Sbjct: 11  ARTAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 65


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 13/42 (30%), Positives = 17/42 (40%)

Query: 48  KVIGLTTTHGNVNEDQVYVNSQRILGVANRRDVPIYRGCSEP 89
           K I     + N N  ++Y N   I  +     VPIY G   P
Sbjct: 310 KTIHNNNNYNNYNNKKLYYNINYIEQIPVPVPVPIYYGNFPP 351


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 50  IGLTTTHGNVNEDQVYVNSQRILGVANRRDV 80
           IG   T+ N+ E   YV      G+A   DV
Sbjct: 174 IGTLATNDNILESISYVKDDGTEGIAKSGDV 204


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 71  ILGVANRRDVPIYRGCSEPLI 91
           +LGV  +R+   Y  C EP I
Sbjct: 199 LLGVPGKRNEIYYNCCPEPYI 219


>AB248729-1|BAF02606.1|   43|Apis mellifera distal-less protein.
          Length = 43

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 6/20 (30%), Positives = 13/20 (65%)

Query: 295 SEPNVKLWYRLNMQKYKQFL 314
           ++  VK+W++    KYK+ +
Sbjct: 21  TQTQVKIWFQNRRSKYKKMM 40


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,991
Number of Sequences: 429
Number of extensions: 3996
Number of successful extensions: 20
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 5
length of query: 321
length of database: 140,377
effective HSP length: 58
effective length of query: 263
effective length of database: 115,495
effective search space: 30375185
effective search space used: 30375185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)