GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003329-TA|BGIBMGA003329-PA|undefined
         (149 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   1.7  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   7.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    20   9.3  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)

Query: 10  ATNQDQIDHIARRL---QLGIDNGLIIGAPTDPE 40
           AT  D++ H+ARR     L +  G++ GA +D E
Sbjct: 390 ATFPDEVQHLARRFLNNYLFLAVGIVGGACSDVE 423


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 10/47 (21%), Positives = 20/47 (42%)

Query: 68  FPHRDLNNGAGVYGNFDNIGIRFDGKSDKVLYSGFRRNSKSFPVSMP 114
           + + + NN    Y N++N    ++    K+ Y+         PV +P
Sbjct: 322 YKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNINYIEQIPVPVPVP 368


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 19  IARRLQLGIDNGLIIGAPTDP 39
           +A++LQ  I N +I+   T+P
Sbjct: 165 VAQKLQKEIPNSIILDQYTNP 185


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.143    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,929
Number of Sequences: 429
Number of extensions: 1859
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 149
length of database: 140,377
effective HSP length: 53
effective length of query: 96
effective length of database: 117,640
effective search space: 11293440
effective search space used: 11293440
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 40 (20.2 bits)