GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003327-TA|BGIBMGA003327-PA|undefined
         (231 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.78 
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   1.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   1.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.2  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   4.2  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.5  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 17/172 (9%)

Query: 5   TKQLLTDVLNLRWMEFLKKIIKEARMLENYEMSYENIELSVNFKLNVDHLNINDVSHYAK 64
           T Q L  + +  W +  KK      +L ++E  YE     ++ K+ +++ NI  ++H   
Sbjct: 739 TIQSLMKLKSPEWKDLAKKARSVNHLLTHHEYDYELSRGYIDEKI-LENQNI--ITHMIL 795

Query: 65  DILKFNHCTSATEFDFSIPEFNVDIEIKSNISGQTRAELDIGGFKLALEINGRIYLRNVK 124
           + +             +    N DI++ S     T+    I   K  +E++    LR+VK
Sbjct: 796 NYVGSEDSVIPRILYLTWYSSNGDIKVPS-----TKVLAMISSVKSFMELS----LRSVK 846

Query: 125 ISGAIGFFMREKQRYITGDELKIIPDVVKTLNGSPVKFAKMLLKPDSFDPSI 176
               I     EK      +ELKI+P+ +  L G+ +   K  LK   FD  I
Sbjct: 847 DRETI-ISAAEK----IAEELKIVPEELVPLEGNLMINNKYALKFFPFDKHI 893


>AF023666-1|AAC14552.1|  363|Apis mellifera
          sn-glycerol-3-phosphate dehydrogenase protein.
          Length = 363

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 18 MEFLKKIIKEARMLENYEMSYENIELSVNFKLNVDHLNINDVSHYAKD 65
          M   ++II   ++ E    ++EN++     KL  + + I DV   AKD
Sbjct: 39 MYVYEEIINGKKLTEIINETHENVKYLPGHKLPPNIIAIPDVVEAAKD 86


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 45  VNFKLNVDHLNINDVSHYAKDILKFNHCTSATEFD 79
           VN   N D +N   +    K++++  HC +  + D
Sbjct: 387 VNDDFNFDDVNFRILGANVKELIRNTHCVNNNQND 421


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/45 (28%), Positives = 31/45 (68%), Gaps = 4/45 (8%)

Query: 1   MDNVTKQLLTDVLNLRWMEFLKKIIKEARMLENYEMSYENIELSV 45
           +DN+ K++  D+L    +E   +I+ EA++L+N+++  +N +++V
Sbjct: 566 IDNIKKEIY-DILPEVDVE---EILGEAKVLQNFDIKDKNKKVNV 606


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic
          acetylcholine receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 6/17 (35%), Positives = 13/17 (76%)

Query: 45 VNFKLNVDHLNINDVSH 61
          ++F L++ H N+++ SH
Sbjct: 62 IDFGLSIQHYNVDEYSH 78



 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 62 YAKDILKFNHCTSATEFDFSIPEFNVD 88
          Y +DI+      +  +F  SI  +NVD
Sbjct: 48 YDRDIIPEQKNATKIDFGLSIQHYNVD 74


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/30 (23%), Positives = 17/30 (56%)

Query: 45  VNFKLNVDHLNINDVSHYAKDILKFNHCTS 74
           +N  LN++H+N   +     D+++ + C +
Sbjct: 387 LNNDLNLEHVNFQILGANVNDLIRNSRCAN 416


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 142 GDELKIIPDVVKTLNGSPV 160
           GD  KI+PD++  +  +P+
Sbjct: 30  GDYTKIMPDILTAIGQTPL 48


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.140    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,325
Number of Sequences: 429
Number of extensions: 2724
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 8
length of query: 231
length of database: 140,377
effective HSP length: 56
effective length of query: 175
effective length of database: 116,353
effective search space: 20361775
effective search space used: 20361775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)