GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003322-TA|BGIBMGA003322-PA|IPR013053|Hormone binding
         (226 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              26   0.25 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   1.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.0  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   9.3  

>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 1  MKIFVVLTAILACASTQTFDE 21
          MK  V+++AI  C S  T DE
Sbjct: 1  MKTIVIISAICVCVSAMTLDE 21


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 6/47 (12%)

Query: 69  EDFHALAAFAEDIKSTGLSNIVIITNNFSILSARLNLVLSLPRVEAS 115
           E+F +L     ++++T ++NI+ + N       + NL LSLP+++++
Sbjct: 489 EEFQSLNNAVGEMEATNVTNILSMDNT------QYNLDLSLPQLDST 529


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 5/46 (10%)

Query: 7    LTAILACASTQTFDE--QTEINARQERLVTNQVASAI---ENIRKQ 47
            LT IL     Q+  +  Q++   +Q+ +VTNQ   +I    NI++Q
Sbjct: 963  LTTILPPVKVQSQQQSQQSQQQQQQQTIVTNQAGKSILQTANIKQQ 1008


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 91  IITNNFSILSARLNLVLSLPRVEASVGAA 119
           +I   F+I+S+   +VL+L +V    GA+
Sbjct: 74  LIVPVFTIVSSYAAIVLTLKKVRKRAGAS 102


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,803
Number of Sequences: 429
Number of extensions: 1389
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 226
length of database: 140,377
effective HSP length: 56
effective length of query: 170
effective length of database: 116,353
effective search space: 19780010
effective search space used: 19780010
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)