GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003317-TA|BGIBMGA003317-PA|IPR001757|ATPase, P-type,
K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter, IPR008250|E1-E2
ATPase-associated region, IPR006539|Phospholipid-translocating P-type
ATPase, flippase
         (1015 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    23   9.5  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    23   9.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   9.5  

>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 23.4 bits (48), Expect = 9.5
 Identities = 13/47 (27%), Positives = 19/47 (40%)

Query: 551 RTLARQEYLEFEARTLTAEYKEARLCTSGRGERTAAVLCKLHRGLEL 597
           R   RQ Y  ++   L  E+   R  T  R    A  LC   R +++
Sbjct: 8   RKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKI 54


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 23.4 bits (48), Expect = 9.5
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 768 VGIEG-AEGRAASLAGDVSVRQLSNLARLFL 797
           VG  G A G A  + GD  VR  +   RLF+
Sbjct: 100 VGFSGLAAGFAIGIVGDAGVRGTAQQPRLFV 130


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 9.5
 Identities = 13/47 (27%), Positives = 19/47 (40%)

Query: 551 RTLARQEYLEFEARTLTAEYKEARLCTSGRGERTAAVLCKLHRGLEL 597
           R   RQ Y  ++   L  E+   R  T  R    A  LC   R +++
Sbjct: 270 RKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKI 316


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.138    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,590
Number of Sequences: 429
Number of extensions: 8779
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 3
length of query: 1015
length of database: 140,377
effective HSP length: 65
effective length of query: 950
effective length of database: 112,492
effective search space: 106867400
effective search space used: 106867400
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 48 (23.4 bits)