GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003316-TA|BGIBMGA003316-PA|undefined
         (148 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   1.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   5.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   5.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   5.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.1  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   7.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   9.4  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 73  TFRSRPRDKSPKIREQPN-EGSGTSLANGTPGSFRIR 108
           T     + KSPK+R  PN E       +G    FRI+
Sbjct: 216 TVPKHSKTKSPKLRPYPNWEWHTVGNCDGLTSVFRIQ 252


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 10  APSGLLTITCIVGTYSAD 27
           A S L +  C+VGT+S D
Sbjct: 187 ALSSLFSKGCLVGTWSPD 204


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 10  APSGLLTITCIVGTYSAD 27
           A S L +  C+VGT+S D
Sbjct: 187 ALSSLFSKGCLVGTWSPD 204


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 10  APSGLLTITCIVGTYSAD 27
           A S L +  C+VGT+S D
Sbjct: 187 ALSSLFSKGCLVGTWSPD 204


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 64  IARLKANSFTFRSRPRDKSPKI 85
           + +L +  F  R +P D  PK+
Sbjct: 84  LRKLNSRLFVIRGQPADALPKL 105


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 75  RSRPRDKSPKIREQPNEGSGTS 96
           RS+ + KSP+ R++ N  S TS
Sbjct: 82  RSKTKSKSPESRDRSNT-SNTS 102


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 10/39 (25%), Positives = 20/39 (51%)

Query: 76  SRPRDKSPKIREQPNEGSGTSLANGTPGSFRIRSVTTAS 114
           SRP DK  +  ++  + S  + A+ + G   +R  ++ S
Sbjct: 347 SRPSDKEEREAQKSQKPSPVTGASKSHGDLELRQRSSKS 385


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.129    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,897
Number of Sequences: 429
Number of extensions: 1254
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 148
length of database: 140,377
effective HSP length: 52
effective length of query: 96
effective length of database: 118,069
effective search space: 11334624
effective search space used: 11334624
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)