GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003308-TA|BGIBMGA003308-PA|IPR001841|Zinc finger,
RING-type
         (153 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.60 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   3.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   5.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    20   9.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   9.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    20   9.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    20   9.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 0.60
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 78  RLRARNNQNSADAEVPPELEDSQETSDQDELNGSTEAQPLLE 119
           RLR R  QN  D E   + +D +E  ++++  G +EA+  L+
Sbjct: 265 RLRKRR-QN--DGEGADDRDDDEENEEEEDGRGQSEAEKRLK 303


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 73  ARFMSRLRARNNQNSADAEVPPELEDSQ 100
           AR ++ ++  ++  S +  V  ELED Q
Sbjct: 149 ARILAAMQQSSHSRSQEKAVAAELEDEQ 176


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 54  RDQGGGTFEEQRENPFVRAARFMSRLRARNNQNSADAEVPPEL 96
           R + G TFEE +    +   R   R ++ N   +A  ++ P L
Sbjct: 241 RRKSGATFEEIQNQRVMANVRERQRTQSLNEAFAALRKIIPTL 283


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 7   ACIDPWL 13
           +CIDPW+
Sbjct: 329 SCIDPWI 335


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 6/19 (31%), Positives = 13/19 (68%)

Query: 91  EVPPELEDSQETSDQDELN 109
           ++PPE E+ +E   + +L+
Sbjct: 315 DIPPETEEEEENDKKLDLD 333


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 5/7 (71%), Positives = 7/7 (100%)

Query: 7   ACIDPWL 13
           +CIDPW+
Sbjct: 329 SCIDPWI 335


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)

Query: 92  VPPELEDSQETS 103
           V PE+ED+ ETS
Sbjct: 261 VVPEIEDNLETS 272


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.128    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,114
Number of Sequences: 429
Number of extensions: 1475
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 153
length of database: 140,377
effective HSP length: 53
effective length of query: 100
effective length of database: 117,640
effective search space: 11764000
effective search space used: 11764000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.9 bits)
S2: 40 (20.2 bits)