GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003304-TA|BGIBMGA003304-PA|IPR001863|Glypican
         (642 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    36   0.001

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 35.5 bits (78), Expect = 0.001
 Identities = 30/82 (36%), Positives = 36/82 (43%), Gaps = 11/82 (13%)

Query: 397 SSTSTPSAPCFNGSAVASYTLIAAGDGTIGLASNPEVKGKVSPTAETVVAAEIETLKTLT 456
           ++  T  APCF    + S  L  A D   G AS   V   VSPT E  +  EIE  KT+ 
Sbjct: 461 ATVGTTVAPCFE-EPLPSLPLPGADDDLFGPASPAYVHEDVSPTFEKPLVREIE--KTID 517

Query: 457 --------ARLKDAFNGVEVQW 470
                   A+ KD F  VE  W
Sbjct: 518 DARFIAQHAKNKDKFESVEEDW 539


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,171
Number of Sequences: 429
Number of extensions: 5118
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 1
length of query: 642
length of database: 140,377
effective HSP length: 62
effective length of query: 580
effective length of database: 113,779
effective search space: 65991820
effective search space used: 65991820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)