GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003302-TA|BGIBMGA003302-PA|undefined
         (124 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.44 
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   1.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   3.1  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   3.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   7.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   7.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 0.44
 Identities = 12/26 (46%), Positives = 13/26 (50%)

Query: 36  AREAPSSPFALARVDASEPGILDSTW 61
           A EAPS P    RVD  +   L  TW
Sbjct: 972 AEEAPSGPPTSIRVDDLDQHTLKVTW 997



 Score = 21.4 bits (43), Expect = 3.1
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)

Query: 37   REAPSSPFALARVDASEPGILDSTWPCCEPTIFDMGVVT 75
            ++AP +P A+  +  S   IL S  P  +P     GV+T
Sbjct: 1177 QDAPEAPIAIKALVMSSESILVSWRPPSQPN----GVIT 1211


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 14/47 (29%), Positives = 19/47 (40%)

Query: 7   PADRYYAATGTSLACYCRRNHRGARASGNAREAPSSPFALARVDASE 53
           PA     ATG  LAC   R  +  R  G   E     F + R+ + +
Sbjct: 160 PALEEQFATGRVLACISSRPGQCGREDGYILEGKELEFYMRRIKSKK 206


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 8/21 (38%), Positives = 14/21 (66%), Gaps = 2/21 (9%)

Query: 53  EPGILDSTWPCCEPT--IFDM 71
           + GI+++T P C P   +FD+
Sbjct: 143 DSGIINNTQPMCSPKLHVFDL 163


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 14  ATGTSLACYCRRNHRGARASGNAREAPSSP 43
           AT T  +   + NH  ++  GN     +SP
Sbjct: 206 ATPTDFSMGVKNNHVSSKVEGNGVHEENSP 235


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 8/18 (44%), Positives = 9/18 (50%)

Query: 39   APSSPFALARVDASEPGI 56
            +PSSP    R     PGI
Sbjct: 1484 SPSSPVLSVRTQGQAPGI 1501


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 8/18 (44%), Positives = 9/18 (50%)

Query: 39   APSSPFALARVDASEPGI 56
            +PSSP    R     PGI
Sbjct: 1480 SPSSPVLSVRTQGQAPGI 1497


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.132    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,419
Number of Sequences: 429
Number of extensions: 1218
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 124
length of database: 140,377
effective HSP length: 51
effective length of query: 73
effective length of database: 118,498
effective search space:  8650354
effective search space used:  8650354
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.9 bits)
S2: 39 (19.8 bits)