Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA003301-TA|BGIBMGA003301-PA|IPR007741|Mitochondrial
ribosome
(89 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR457016-1|CAG33297.1| 99|Homo sapiens CD14 protein. 103 9e-23
BC003674-1|AAH03674.1| 99|Homo sapiens NADH dehydrogenase (ubi... 103 9e-23
AF047185-1|AAC04270.1| 99|Homo sapiens NADH-ubiquinone oxidore... 103 9e-23
AB054976-1|BAB21453.1| 99|Homo sapiens NADH dehydrogenase (ubi... 103 9e-23
BC053373-1|AAH53373.1| 202|Homo sapiens mitochondrial ribosomal... 40 0.002
BC052639-1|AAH52639.1| 164|Homo sapiens MRPL43 protein protein. 40 0.002
BC041165-1|AAH41165.1| 215|Homo sapiens mitochondrial ribosomal... 40 0.002
BC015905-1|AAH15905.1| 159|Homo sapiens mitochondrial ribosomal... 40 0.002
AL133215-9|CAI10923.1| 159|Homo sapiens mitochondrial ribosomal... 40 0.002
AL133215-8|CAI10922.1| 164|Homo sapiens mitochondrial ribosomal... 40 0.002
AL133215-7|CAI10921.1| 168|Homo sapiens mitochondrial ribosomal... 40 0.002
AL133215-6|CAI10920.1| 202|Homo sapiens mitochondrial ribosomal... 40 0.002
AL133215-5|CAI10919.1| 215|Homo sapiens mitochondrial ribosomal... 40 0.002
AL133215-4|CAI10918.1| 261|Homo sapiens mitochondrial ribosomal... 40 0.002
AL133215-3|CAI10917.1| 184|Homo sapiens mitochondrial ribosomal... 40 0.002
AK095556-1|BAC04572.1| 215|Homo sapiens protein ( Homo sapiens ... 40 0.002
AB049656-1|BAB40861.1| 197|Homo sapiens mitochondrial ribosomal... 40 0.002
BC031287-1|AAH31287.1| 145|Homo sapiens MRPL43 protein protein. 33 0.11
AK222851-1|BAD96571.1| 852|Homo sapiens Hypothetical protein DK... 27 9.2
>CR457016-1|CAG33297.1| 99|Homo sapiens CD14 protein.
Length = 99
Score = 103 bits (247), Expect = 9e-23
Identities = 44/80 (55%), Positives = 60/80 (75%)
Query: 9 LKELRIHLCQTSKQSEGVREFIKNNYVNIKKENPNFPILIRECSGIQPRVWARYERGAEK 68
L+E+RIHLCQ S S+GVR+FI+ YV +KK NP+ PILIRECS +QP++WARY G E
Sbjct: 16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQET 75
Query: 69 STPLTNLSANDVQSAIKQLV 88
+ PL N SA+ V A++ ++
Sbjct: 76 NVPLNNFSADQVTRALENVL 95
>BC003674-1|AAH03674.1| 99|Homo sapiens NADH dehydrogenase
(ubiquinone) 1 alpha subcomplex, 2, 8kDa protein.
Length = 99
Score = 103 bits (247), Expect = 9e-23
Identities = 44/80 (55%), Positives = 60/80 (75%)
Query: 9 LKELRIHLCQTSKQSEGVREFIKNNYVNIKKENPNFPILIRECSGIQPRVWARYERGAEK 68
L+E+RIHLCQ S S+GVR+FI+ YV +KK NP+ PILIRECS +QP++WARY G E
Sbjct: 16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQET 75
Query: 69 STPLTNLSANDVQSAIKQLV 88
+ PL N SA+ V A++ ++
Sbjct: 76 NVPLNNFSADQVTRALENVL 95
>AF047185-1|AAC04270.1| 99|Homo sapiens NADH-ubiquinone
oxidoreductase subunit CI-B8 protein.
Length = 99
Score = 103 bits (247), Expect = 9e-23
Identities = 44/80 (55%), Positives = 60/80 (75%)
Query: 9 LKELRIHLCQTSKQSEGVREFIKNNYVNIKKENPNFPILIRECSGIQPRVWARYERGAEK 68
L+E+RIHLCQ S S+GVR+FI+ YV +KK NP+ PILIRECS +QP++WARY G E
Sbjct: 16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQET 75
Query: 69 STPLTNLSANDVQSAIKQLV 88
+ PL N SA+ V A++ ++
Sbjct: 76 NVPLNNFSADQVTRALENVL 95
>AB054976-1|BAB21453.1| 99|Homo sapiens NADH dehydrogenase
(ubiquinone) 1 alpha subcomplex 2 protein.
Length = 99
Score = 103 bits (247), Expect = 9e-23
Identities = 44/80 (55%), Positives = 60/80 (75%)
Query: 9 LKELRIHLCQTSKQSEGVREFIKNNYVNIKKENPNFPILIRECSGIQPRVWARYERGAEK 68
L+E+RIHLCQ S S+GVR+FI+ YV +KK NP+ PILIRECS +QP++WARY G E
Sbjct: 16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQET 75
Query: 69 STPLTNLSANDVQSAIKQLV 88
+ PL N SA+ V A++ ++
Sbjct: 76 NVPLNNFSADQVTRALENVL 95
>BC053373-1|AAH53373.1| 202|Homo sapiens mitochondrial ribosomal
protein L43 protein.
Length = 202
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/79 (24%), Positives = 36/79 (45%)
Query: 9 LKELRIHLCQTSKQSEGVREFIKNNYVNIKKENPNFPILIRECSGIQPRVWARYERGAEK 68
L+ L + + S G REF++ ++ + NP I + PRV A Y GA +
Sbjct: 26 LQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYLNGAVR 85
Query: 69 STPLTNLSANDVQSAIKQL 87
+ S ++ + +++L
Sbjct: 86 EESIHCKSVEEISTLVQKL 104
>BC052639-1|AAH52639.1| 164|Homo sapiens MRPL43 protein protein.
Length = 164
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/79 (24%), Positives = 36/79 (45%)
Query: 9 LKELRIHLCQTSKQSEGVREFIKNNYVNIKKENPNFPILIRECSGIQPRVWARYERGAEK 68
L+ L + + S G REF++ ++ + NP I + PRV A Y GA +
Sbjct: 26 LQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYLNGAVR 85
Query: 69 STPLTNLSANDVQSAIKQL 87
+ S ++ + +++L
Sbjct: 86 EESIHCKSVEEISTLVQKL 104
>BC041165-1|AAH41165.1| 215|Homo sapiens mitochondrial ribosomal
protein L43 protein.
Length = 215
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/79 (24%), Positives = 36/79 (45%)
Query: 9 LKELRIHLCQTSKQSEGVREFIKNNYVNIKKENPNFPILIRECSGIQPRVWARYERGAEK 68
L+ L + + S G REF++ ++ + NP I + PRV A Y GA +
Sbjct: 26 LQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYLNGAVR 85
Query: 69 STPLTNLSANDVQSAIKQL 87
+ S ++ + +++L
Sbjct: 86 EESIHCKSVEEISTLVQKL 104
>BC015905-1|AAH15905.1| 159|Homo sapiens mitochondrial ribosomal
protein L43 protein.
Length = 159
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/79 (24%), Positives = 36/79 (45%)
Query: 9 LKELRIHLCQTSKQSEGVREFIKNNYVNIKKENPNFPILIRECSGIQPRVWARYERGAEK 68
L+ L + + S G REF++ ++ + NP I + PRV A Y GA +
Sbjct: 26 LQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYLNGAVR 85
Query: 69 STPLTNLSANDVQSAIKQL 87
+ S ++ + +++L
Sbjct: 86 EESIHCKSVEEISTLVQKL 104
>AL133215-9|CAI10923.1| 159|Homo sapiens mitochondrial ribosomal
protein L43 protein.
Length = 159
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/79 (24%), Positives = 36/79 (45%)
Query: 9 LKELRIHLCQTSKQSEGVREFIKNNYVNIKKENPNFPILIRECSGIQPRVWARYERGAEK 68
L+ L + + S G REF++ ++ + NP I + PRV A Y GA +
Sbjct: 26 LQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYLNGAVR 85
Query: 69 STPLTNLSANDVQSAIKQL 87
+ S ++ + +++L
Sbjct: 86 EESIHCKSVEEISTLVQKL 104
>AL133215-8|CAI10922.1| 164|Homo sapiens mitochondrial ribosomal
protein L43 protein.
Length = 164
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/79 (24%), Positives = 36/79 (45%)
Query: 9 LKELRIHLCQTSKQSEGVREFIKNNYVNIKKENPNFPILIRECSGIQPRVWARYERGAEK 68
L+ L + + S G REF++ ++ + NP I + PRV A Y GA +
Sbjct: 26 LQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYLNGAVR 85
Query: 69 STPLTNLSANDVQSAIKQL 87
+ S ++ + +++L
Sbjct: 86 EESIHCKSVEEISTLVQKL 104
>AL133215-7|CAI10921.1| 168|Homo sapiens mitochondrial ribosomal
protein L43 protein.
Length = 168
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/79 (24%), Positives = 36/79 (45%)
Query: 9 LKELRIHLCQTSKQSEGVREFIKNNYVNIKKENPNFPILIRECSGIQPRVWARYERGAEK 68
L+ L + + S G REF++ ++ + NP I + PRV A Y GA +
Sbjct: 22 LQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYLNGAVR 81
Query: 69 STPLTNLSANDVQSAIKQL 87
+ S ++ + +++L
Sbjct: 82 EESIHCKSVEEISTLVQKL 100
>AL133215-6|CAI10920.1| 202|Homo sapiens mitochondrial ribosomal
protein L43 protein.
Length = 202
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/79 (24%), Positives = 36/79 (45%)
Query: 9 LKELRIHLCQTSKQSEGVREFIKNNYVNIKKENPNFPILIRECSGIQPRVWARYERGAEK 68
L+ L + + S G REF++ ++ + NP I + PRV A Y GA +
Sbjct: 26 LQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYLNGAVR 85
Query: 69 STPLTNLSANDVQSAIKQL 87
+ S ++ + +++L
Sbjct: 86 EESIHCKSVEEISTLVQKL 104
>AL133215-5|CAI10919.1| 215|Homo sapiens mitochondrial ribosomal
protein L43 protein.
Length = 215
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/79 (24%), Positives = 36/79 (45%)
Query: 9 LKELRIHLCQTSKQSEGVREFIKNNYVNIKKENPNFPILIRECSGIQPRVWARYERGAEK 68
L+ L + + S G REF++ ++ + NP I + PRV A Y GA +
Sbjct: 26 LQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYLNGAVR 85
Query: 69 STPLTNLSANDVQSAIKQL 87
+ S ++ + +++L
Sbjct: 86 EESIHCKSVEEISTLVQKL 104
>AL133215-4|CAI10918.1| 261|Homo sapiens mitochondrial ribosomal
protein L43 protein.
Length = 261
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/79 (24%), Positives = 36/79 (45%)
Query: 9 LKELRIHLCQTSKQSEGVREFIKNNYVNIKKENPNFPILIRECSGIQPRVWARYERGAEK 68
L+ L + + S G REF++ ++ + NP I + PRV A Y GA +
Sbjct: 26 LQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYLNGAVR 85
Query: 69 STPLTNLSANDVQSAIKQL 87
+ S ++ + +++L
Sbjct: 86 EESIHCKSVEEISTLVQKL 104
>AL133215-3|CAI10917.1| 184|Homo sapiens mitochondrial ribosomal
protein L43 protein.
Length = 184
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/79 (24%), Positives = 36/79 (45%)
Query: 9 LKELRIHLCQTSKQSEGVREFIKNNYVNIKKENPNFPILIRECSGIQPRVWARYERGAEK 68
L+ L + + S G REF++ ++ + NP I + PRV A Y GA +
Sbjct: 26 LQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYLNGAVR 85
Query: 69 STPLTNLSANDVQSAIKQL 87
+ S ++ + +++L
Sbjct: 86 EESIHCKSVEEISTLVQKL 104
>AK095556-1|BAC04572.1| 215|Homo sapiens protein ( Homo sapiens
cDNA FLJ38237 fis, clone FCBBF2005637. ).
Length = 215
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/79 (24%), Positives = 36/79 (45%)
Query: 9 LKELRIHLCQTSKQSEGVREFIKNNYVNIKKENPNFPILIRECSGIQPRVWARYERGAEK 68
L+ L + + S G REF++ ++ + NP I + PRV A Y GA +
Sbjct: 26 LQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYLNGAVR 85
Query: 69 STPLTNLSANDVQSAIKQL 87
+ S ++ + +++L
Sbjct: 86 EESIHCKSVEEISTLVQKL 104
>AB049656-1|BAB40861.1| 197|Homo sapiens mitochondrial ribosomal
protein bMRP36a protein.
Length = 197
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/79 (24%), Positives = 36/79 (45%)
Query: 9 LKELRIHLCQTSKQSEGVREFIKNNYVNIKKENPNFPILIRECSGIQPRVWARYERGAEK 68
L+ L + + S G REF++ ++ + NP I + PRV A Y GA +
Sbjct: 26 LQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYLNGAVR 85
Query: 69 STPLTNLSANDVQSAIKQL 87
+ S ++ + +++L
Sbjct: 86 EESIHCKSVEEISTLVQKL 104
>BC031287-1|AAH31287.1| 145|Homo sapiens MRPL43 protein protein.
Length = 145
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 26 VREFIKNNYVNIKKENPNFPILIRECSGIQPRVWARYERGAEKSTPLTNLSANDVQSAIK 85
+REF++ ++ + NP I + PRV A Y GA + + S ++ + ++
Sbjct: 29 LREFVEREVIDFARRNPGVVIYVNSRPCCVPRVVAEYINGAVREESIHCKSVEEISTLVQ 88
Query: 86 QL 87
+L
Sbjct: 89 KL 90
>AK222851-1|BAD96571.1| 852|Homo sapiens Hypothetical protein
DKFZp761I241 (Fragment) variant protein.
Length = 852
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 32 NNYVNIKKENPNFPILIRECSGIQPRVW 59
+N + K+ P+L + C IQPR W
Sbjct: 201 DNIIKFYKKTKQLPVLGKCCEEIQPRQW 228
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.317 0.133 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,945,351
Number of Sequences: 224733
Number of extensions: 431461
Number of successful extensions: 1154
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1135
Number of HSP's gapped (non-prelim): 19
length of query: 89
length of database: 73,234,838
effective HSP length: 67
effective length of query: 22
effective length of database: 58,177,727
effective search space: 1279909994
effective search space used: 1279909994
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)
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