GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003301-TA|BGIBMGA003301-PA|IPR007741|Mitochondrial
ribosome
         (89 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   1.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   1.8  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          19   7.1  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    19   9.4  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    19   9.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    19   9.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 1.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 29  FIKNNYVNIKKEN 41
           FI NNY+N+ + N
Sbjct: 623 FINNNYINLVRPN 635



 Score = 19.0 bits (37), Expect = 9.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 8   ALKELRIHLCQTSKQSEG 25
           +L EL +H C+  +  EG
Sbjct: 93  SLHELHVHGCKVLRIPEG 110


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor
          protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 1.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 59 WARYERGAEKSTP 71
          W +Y  GAE +TP
Sbjct: 28 WTKYPFGAEANTP 40


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 37 IKKENPNFPILIRECSG 53
          +KK N N P L R  +G
Sbjct: 15 LKKRNENDPFLKRPITG 31


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 19.0 bits (37), Expect = 9.4
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 14  IHLCQTSKQSEGVREFIKNNYVNIKKENPNFPILI 48
           +H   T  ++EG   F K  + NI +      +L+
Sbjct: 257 LHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLV 291


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 19.0 bits (37), Expect = 9.4
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 14  IHLCQTSKQSEGVREFIKNNYVNIKKENPNFPILI 48
           +H   T  ++EG   F K  + NI +      +L+
Sbjct: 257 LHCWATIYKTEGGNAFFKGAFSNILRGTGGALVLV 291


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 19.0 bits (37), Expect = 9.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 13  RIHLCQTSKQSEGVRE 28
           R  +CQ  K S+ +RE
Sbjct: 676 RADICQLLKDSQYIRE 691


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.133    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,200
Number of Sequences: 429
Number of extensions: 949
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 89
length of database: 140,377
effective HSP length: 48
effective length of query: 41
effective length of database: 119,785
effective search space:  4911185
effective search space used:  4911185
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.8 bits)
S2: 37 (19.0 bits)