GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003300-TA|BGIBMGA003300-PA|IPR005176|Protein of unknown
function DUF298
         (265 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    27   0.23 
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    24   1.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.6  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
          finger domain-Z1 isoform protein.
          Length = 111

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 2  NKLKSSQRDKVKKFVAFTQTSESTAIYCLSQNDWKLDLASDNYFQNPDA-YYKDSIKTSV 60
          NK+ +S   ++++ +    T  S    C   N  K   +S N  +N  + Y++   K   
Sbjct: 9  NKILTSLT-RLRRHIQNVHTRPSKEPIC---NICKRVYSSLNSLRNHKSIYHRQHSKNEQ 64

Query: 61 DRKKLEQLFNKYRDQQE-LDKITA 83
           RK++EQ+  + R+Q+E  D++T+
Sbjct: 65 QRKEMEQMREREREQREHSDRVTS 88


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)

Query: 182 WNIVLRGRFKFLDAWCKFLTEHHKR 206
           WN +LR  F  LD W + L  H K+
Sbjct: 28  WNTLLRPNF--LDGWYQTLQTHMKK 50


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 32  QNDWKLDLASDNYFQNPDAYYKDSIKTSVDRKKLEQLFNKYRDQQ 76
           QND+ +D +S + F +   Y       + D+K  E L      QQ
Sbjct: 945 QNDYIVDESSSSSFYSSFLYKSSESSCNPDQKPTEYLLEDSMKQQ 989


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,856
Number of Sequences: 429
Number of extensions: 3336
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 265
length of database: 140,377
effective HSP length: 57
effective length of query: 208
effective length of database: 115,924
effective search space: 24112192
effective search space used: 24112192
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)