GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003292-TA|BGIBMGA003292-PA|IPR000215|Proteinase
inhibitor I4, serpin
         (392 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    25   1.1  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   1.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   1.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   1.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   4.5  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 110 VYQSTLILNAYTDIDSPFSETFIQNFAKVFNGTVKNIDYCNDAVATI 156
           V Q  + +N     + P+SET  +   K  +  +K I Y   AVA +
Sbjct: 72  VKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFV 118


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 110 VYQSTLILNAYTDIDSPFSETFIQNFAKVFNGTVKNIDYCNDAVATI 156
           V Q  + +N     + P+SET  +   K  +  +K I Y   AVA +
Sbjct: 88  VKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFV 134


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 110 VYQSTLILNAYTDIDSPFSETFIQNFAKVFNGTVKNIDYCNDAVATI 156
           V Q  + +N     + P+SET  +   K  +  +K I Y   AVA +
Sbjct: 145 VKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFV 191


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 341 HMLSHMRIDFEQPTEEQAESVVAEP 365
           H L + + ++EQP+EE  + +  +P
Sbjct: 340 HRLVYFQNEYEQPSEEDLKRITNQP 364


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 13/47 (27%), Positives = 21/47 (44%)

Query: 110 VYQSTLILNAYTDIDSPFSETFIQNFAKVFNGTVKNIDYCNDAVATI 156
           V Q  + +N     D P+SE   +   K  +  +K I Y   +VA +
Sbjct: 145 VKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYNTASVAFV 191


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.135    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,300
Number of Sequences: 429
Number of extensions: 4192
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 5
length of query: 392
length of database: 140,377
effective HSP length: 59
effective length of query: 333
effective length of database: 115,066
effective search space: 38316978
effective search space used: 38316978
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)