GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003290-TA|BGIBMGA003290-PA|undefined
         (660 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   2.0  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    25   2.6  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    24   4.6  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   8.0  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 13/60 (21%)

Query: 299 YIVTSSRDPLATPPAPPTRHQPAQPAVPLDSVLKVSANESHDTAEPTTLIIEVPPLERCK 358
           Y +   RDP+ TPP+      P  P VP    L        D A P    + +PP +RCK
Sbjct: 425 YGIRVERDPILTPPS----SNPVSP-VPSPDPL--------DLAIPVRETLILPPRKRCK 471


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 222 EKPKPSRKQTDKPLTADARDPALDDDYREWLRQKTLNTRYFGEQKVIAKKQTKARFDGQV 281
           E+   SR++  K    +       +  +E  R +T   R   E K+I+      ++    
Sbjct: 270 ERYSRSREREQKSYKNEREYRKYGETSKERSRDRTERERS-KEPKIISSLSNNYKYSNYN 328

Query: 282 NYNHDRNNH 290
           NYN++ NN+
Sbjct: 329 NYNNNYNNY 337


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 264 EQKVIAKKQTKARFDGQVNYNHDRNNHIIDVARTRYIVTSSRDPLATP 311
           E+K+I+       ++   NY ++ NN+   +    YI+   + P+  P
Sbjct: 311 ERKIISSLSNNYNYNNN-NYKYNYNNYNKKLYYKNYIINIEQIPVPVP 357


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 87  GHEQGPDEEHVLLPGAPPQGD 107
           G  + P E+  L P  PPQG+
Sbjct: 33  GSAEQPKEQEPLPPVTPPQGE 53


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.133    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,531
Number of Sequences: 429
Number of extensions: 5543
Number of successful extensions: 28
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 4
length of query: 660
length of database: 140,377
effective HSP length: 62
effective length of query: 598
effective length of database: 113,779
effective search space: 68039842
effective search space used: 68039842
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)