GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003282-TA|BGIBMGA003282-PA|undefined
         (71 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   1.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   1.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   2.0  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    19   6.0  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    19   7.9  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
          protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 1.1
 Identities = 6/19 (31%), Positives = 9/19 (47%)

Query: 42 NCVHPEEDQAVNWSAVCTA 60
          NC+HP     + W   C +
Sbjct: 37 NCIHPTVFSVLFWLGYCNS 55


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 1.1
 Identities = 6/19 (31%), Positives = 9/19 (47%)

Query: 42  NCVHPEEDQAVNWSAVCTA 60
           NC+HP     + W   C +
Sbjct: 485 NCIHPTVFSVLFWLGYCNS 503


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.6 bits (41), Expect = 2.0
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 44  VHPEEDQAVNWSAVC 58
           +HP E +AVN  + C
Sbjct: 428 LHPRELEAVNLGSAC 442


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 19.0 bits (37), Expect = 6.0
 Identities = 6/8 (75%), Positives = 6/8 (75%)

Query: 42  NCVHPEED 49
           N  HPEED
Sbjct: 120 NAAHPEED 127


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 18.6 bits (36), Expect = 7.9
 Identities = 8/17 (47%), Positives = 9/17 (52%)

Query: 24  RFSVCPALCGNSLGYPL 40
           R S   AL   + GYPL
Sbjct: 129 RLSRSSALASKATGYPL 145


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.136    0.451 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,456
Number of Sequences: 429
Number of extensions: 724
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 71
length of database: 140,377
effective HSP length: 45
effective length of query: 26
effective length of database: 121,072
effective search space:  3147872
effective search space used:  3147872
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
S2: 36 (18.6 bits)