GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003281-TA|BGIBMGA003281-PA|IPR010916|TonB box,
N-terminal
         (141 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.30 
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    24   0.53 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   6.6  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    20   8.7  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    20   8.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   8.7  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    20   8.7  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    20   8.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    20   8.7  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 25.0 bits (52), Expect = 0.30
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 73  PVEPPVPARTELCADLCHSGLLKGNNSVIHYFSETL 108
           P EPPVP  T  C    ++ L + ++   HY   TL
Sbjct: 180 PPEPPVPTVTSACVGSAYTPLKEDHDD--HYGVPTL 213


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 24.2 bits (50), Expect = 0.53
 Identities = 9/41 (21%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 83  ELCADLCHSGLLKGNNSVIHYFSETLTVSAAHAAEALKREK 123
           + CA++ H G  K   S++   ++ L++   +A+  L+ ++
Sbjct: 93  KFCAEIAHGGSSKKRKSIVER-AQQLSIRVTYASARLRSQE 132


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 12/46 (26%), Positives = 20/46 (43%)

Query: 55  DDGELDRIYLAQFRRGNAPVEPPVPARTELCADLCHSGLLKGNNSV 100
           D+G+  +  L+Q+R+    V+  V         +   G LK N  V
Sbjct: 220 DEGKESKTKLSQWRKDGGTVKKKVNYVYRSVDQVLEDGKLKPNKKV 265


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 34 IPENLRGRQLDTPAVVLQLK 53
          +PE  RGRQ  T    L+L+
Sbjct: 5  VPERKRGRQTYTRYQTLELE 24


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
          protein.
          Length = 125

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 7/10 (70%), Positives = 9/10 (90%)

Query: 53 KYDDGELDRI 62
          KYDD ++DRI
Sbjct: 24 KYDDMDIDRI 33


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 36   ENLRGRQLDTPAVVLQLKYDDGELDR 61
            E LRGR      V  +  Y + ELDR
Sbjct: 1151 EALRGRTAQLIIVQAENAYPEVELDR 1176


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 77  PVPARTELCADLCHSGLL 94
           PVPA+   C  L  SG++
Sbjct: 401 PVPAKKYDCVTLLFSGIV 418


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
          protein.
          Length = 125

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 7/10 (70%), Positives = 9/10 (90%)

Query: 53 KYDDGELDRI 62
          KYDD ++DRI
Sbjct: 24 KYDDMDIDRI 33


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 77  PVPARTELCADLCHSGLL 94
           PVPA+   C  L  SG++
Sbjct: 401 PVPAKKYDCVTLLFSGIV 418


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.141    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,759
Number of Sequences: 429
Number of extensions: 1377
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 141
length of database: 140,377
effective HSP length: 52
effective length of query: 89
effective length of database: 118,069
effective search space: 10508141
effective search space used: 10508141
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 40 (20.2 bits)