GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003280-TA|BGIBMGA003280-PA|undefined
         (438 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   5.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   5.1  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    22   8.9  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    22   8.9  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 85  DDAVKIGAEFDLDAPVGIKKKYEIVNLAKEIK 116
           DD+V  G     +  + + + Y+ VNLA E K
Sbjct: 423 DDSVSAGFSSSSNTWLRVNENYKTVNLAAEKK 454


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 85  DDAVKIGAEFDLDAPVGIKKKYEIVNLAKEIK 116
           DD+V  G     +  + + + Y+ VNLA E K
Sbjct: 423 DDSVSAGFSSSSNTWLRVNENYKTVNLAAEKK 454


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
          protein.
          Length = 90

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 20 YFQDYQNLYKHPNTEILVENVL 41
          YF+D Q L+K   T+  +E V+
Sbjct: 37 YFRDLQPLFKLACTDTFMEGVI 58


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 8/38 (21%), Positives = 17/38 (44%)

Query: 47 GDLSKHDVLNNNFELNSIEDEVMMKTFLERTRRLTVCH 84
          G++ +       ++   +E E     +L R RR+ + H
Sbjct: 6  GEVKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAH 43


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,247
Number of Sequences: 429
Number of extensions: 4645
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 4
length of query: 438
length of database: 140,377
effective HSP length: 60
effective length of query: 378
effective length of database: 114,637
effective search space: 43332786
effective search space used: 43332786
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)