GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003277-TA|BGIBMGA003277-PA|undefined
         (2252 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    29   0.33 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    27   2.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    26   3.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    26   4.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   9.3  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
            monooxygenase protein.
          Length = 517

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 1816 TCYNEKLIKGSKRLFDAVANCISSKSFEKRSDCKNESYSVENISVNII 1863
            TC  ++LI+    +++ ++  I +   EKR D K+E  SVE I  +I+
Sbjct: 265  TCAYKQLIESEDAIYNIISEIIETTIQEKRDDAKDE--SVEAIFQSIL 310


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 658 RIKRDEKKSTIFEITNRIFKTNNNKLDTKDLN----GAKIYTTVPTT-CSKDDNTTAN 710
           R+ R  K   +  ++NR+ K  NN  +  ++N    GA +   +  T C+K +N   N
Sbjct: 369 RMNRIHKNEYMLALSNRMQKIVNNDFNFDEVNFRILGANVNNLIKNTRCAKSNNQNNN 426


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine receptor
            protein.
          Length = 694

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/57 (26%), Positives = 27/57 (47%)

Query: 1804 LARDVNVACKTATCYNEKLIKGSKRLFDAVANCISSKSFEKRSDCKNESYSVENISV 1860
            LAR  +V   ++TC  +K   GS   F       +SK   ++S  K E  + + +++
Sbjct: 567  LARTPSVMSASSTCKKDKKNAGSGSRFTIYKANKASKKKREKSSAKKERKATKTLAI 623


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 656 NDRIKRDEKKSTIFEITNRIFKTNNNKLD--TKDLN 689
           ND    +EK++   E  NR++K+  N +D  TKD+N
Sbjct: 434 NDLSINEEKRTIENEQLNRMYKSYPNYIDKETKDMN 469


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 17/84 (20%), Positives = 39/84 (46%), Gaps = 8/84 (9%)

Query: 2168 PLDNMKTRKDYIKNITENSTESSDDTLIVINEVKRDKCKNLLLAIIDFEINKLNREWIEC 2227
            P+D  +  +   K ++  + + S  ++I   E+K++        + D E + +  E    
Sbjct: 260  PIDAYEMHQISKKKLSPATPKGSKCSMITTPEIKKE--------VEDMEYDDIKTELSTG 311

Query: 2228 ANGELYKRRRCSEEDDKKIGIENI 2251
             N ++       EE+DKK+ +++I
Sbjct: 312  MNDDIPPETEEEEENDKKLDLDSI 335


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.129    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 624,229
Number of Sequences: 429
Number of extensions: 28657
Number of successful extensions: 46
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 5
length of query: 2252
length of database: 140,377
effective HSP length: 69
effective length of query: 2183
effective length of database: 110,776
effective search space: 241824008
effective search space used: 241824008
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)