GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003274-TA|BGIBMGA003274-PA|undefined
         (291 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   7.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.3  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 6/16 (37%), Positives = 13/16 (81%)

Query: 134 PNLPQIENLTETDSFE 149
           P +P+++N T+T +F+
Sbjct: 642 PIMPRVQNATDTTNFD 657


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 86  IMMKKQEKGREARVQSWVIGERNLDTTDDFDLTQSDPTSPQTDPV 130
           I+ KK +      V +   GE N DT  D +   +  T+P  D +
Sbjct: 113 ILEKKPDVTTVELVDATDPGEHNGDTVTDVEAGLASRTNPLDDSI 157


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.129    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,702
Number of Sequences: 429
Number of extensions: 1636
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 291
length of database: 140,377
effective HSP length: 57
effective length of query: 234
effective length of database: 115,924
effective search space: 27126216
effective search space used: 27126216
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 43 (21.4 bits)