Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA003271-TA|BGIBMGA003271-PA|undefined
(686 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 27 0.51
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 27 0.51
DQ666693-1|ABG29167.1| 250|Apis mellifera MAX dimerization prot... 25 2.7
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 25 2.7
DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channe... 24 3.6
DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 24 3.6
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 24 4.8
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 24 4.8
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 23 8.3
AF388659-1|AAK71995.1| 782|Apis mellifera 1D-myo-inositol-trisp... 23 8.3
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 8.3
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 27.1 bits (57), Expect = 0.51
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 505 IPDTNENFYSYSTMNGLKDGLSAV 528
I TNE +Y +NG+ GLSAV
Sbjct: 745 IQKTNEGYYLCEAVNGIGAGLSAV 768
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 27.1 bits (57), Expect = 0.51
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 384 ERESYAVYEIDPTRPFTAKGIITNAEQPHYVPIYDYSSKNAYFNPKNLN 432
ER+ YAV P + ++ +++P+ SS+++ F+ KN++
Sbjct: 93 ERQVYAVVVSHPLTGDLSPAAVSYTSGFYHIPVIGISSRDSAFSDKNIH 141
>DQ666693-1|ABG29167.1| 250|Apis mellifera MAX dimerization protein
protein.
Length = 250
Score = 24.6 bits (51), Expect = 2.7
Identities = 10/55 (18%), Positives = 28/55 (50%)
Query: 277 QSDNNYSSILVNKTDSIVLSTTTNSTANDSEITTNNNIEYKNNLNVKNNVERSRV 331
++++ Y+S + D ++ + + TT+N +E +++N +E+ +V
Sbjct: 19 EAEHGYASTMPMPDDMRTVTKRPKTKKSQGSRTTHNELEKNRRAHLRNCLEKLKV 73
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 24.6 bits (51), Expect = 2.7
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 306 SEITTNNNIEYKNNLNVKNNVERSRVSLSFSKDNKVLNDDM 346
S++T+N + E+++ N +E + V+ S DN N D+
Sbjct: 481 SKVTSNYHEEFQSLNNAVGEMEATNVTNILSMDNTQYNLDL 521
>DQ667184-1|ABG75736.1| 489|Apis mellifera GABA-gated ion channel
protein.
Length = 489
Score = 24.2 bits (50), Expect = 3.6
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 171 YNYDETNQTTATDDMLSTTYGTPIKITEKPEIFLNETHIFLKARLDSNLTVEISQDKNLT 230
Y DE + +++L+ + KI F N+ + FL + N V +S D ++T
Sbjct: 91 YWKDERLAFSQEEEVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLSGDGSVT 150
Query: 231 Y 231
Y
Sbjct: 151 Y 151
>DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 24.2 bits (50), Expect = 3.6
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 306 SEITTNNNIEYKNNLNVKNNVERSRVSLSFSKDNKVLN 343
S T +NN YK N N K N + + N ++N
Sbjct: 86 SNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYIIN 123
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 23.8 bits (49), Expect = 4.8
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 294 VLSTTTNSTANDSEITTNNNIE-YKNNLNVKNNVERSRVSLSF 335
++S+ +N T +++ NNN Y N N NN ++ ++++
Sbjct: 81 IISSLSNKTIHNNNNYNNNNYNNYNYNNNNYNNYKKLYYNINY 123
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 23.8 bits (49), Expect = 4.8
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 290 TDSIVLSTTTNSTANDSEITTNN-NIEYKNNLNVKNN 325
T V+ T +N+S IT N N NN N NN
Sbjct: 210 TAGAVVLETCQRNSNNSTITAGNANTNASNNNNNNNN 246
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 23.0 bits (47), Expect = 8.3
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 371 NEKRPRLRKKPKNERESYAVYEIDPTRPFTAKGIITNAEQPHYVPI----YDYSSKNAYF 426
+ R R +K KNE SY Y + +++P + Y YS+ N Y
Sbjct: 273 SRSREREQKSYKNEN-SYRKYRETSKERSRDRKERERSKEPKIISSLSNNYKYSNYNNYN 331
Query: 427 NPKNLNGPNHDNK 439
N N N N++ K
Sbjct: 332 NYNNNNYNNYNKK 344
>AF388659-1|AAK71995.1| 782|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
Length = 782
Score = 23.0 bits (47), Expect = 8.3
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 13/95 (13%)
Query: 259 DTPTNIDTNNTVTEASVSQSDNNYSSILVN---KTDSIVLSTTTNSTA-NDSEITTNNNI 314
+T DT S+S+S N I + + SI + +STA +D +I+ +
Sbjct: 175 ETYDEFDTIRIPIVRSLSKSPPNDEGIETDSDRRKGSIARCWSLDSTAASDEDISLTTHQ 234
Query: 315 EYKNNLNVKNNVERSRVSLSFSKDNKVLNDDMKTK 349
+ ++ L RV+ +S D+ VL+D+ +TK
Sbjct: 235 QKRHKL---------RVTRCYSSDSAVLSDEDQTK 260
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 23.0 bits (47), Expect = 8.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 273 ASVSQSDNNYSSILVNKTDSIVLSTTTNSTANDS 306
AS S S N SS N+T S T+N+T+ +S
Sbjct: 600 ASGSGSAENLSSGSNNQTSSASRENTSNTTSMES 633
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.311 0.130 0.358
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,625
Number of Sequences: 429
Number of extensions: 9697
Number of successful extensions: 30
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 15
length of query: 686
length of database: 140,377
effective HSP length: 62
effective length of query: 624
effective length of database: 113,779
effective search space: 70998096
effective search space used: 70998096
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 47 (23.0 bits)
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