GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003267-TA|BGIBMGA003267-PA|IPR000886|Endoplasmic
reticulum targeting sequence
         (192 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   0.82 
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   5.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.6  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 12/59 (20%), Positives = 28/59 (47%)

Query: 24  SAVYISELIDEICKKMDDYVRVYYKSTGKLTIMQLMTKEGGMNPEFSKTKFVTDDDLNK 82
           S V +S  +++   K +DY+     S+   +     + E   NP+   T+++ +D + +
Sbjct: 930 SLVDVSTPVNKKVYKQNDYIVDESSSSSFYSSFLYKSSESSCNPDQKPTEYLLEDSMKQ 988


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 81  NKSLEYYCERMFEDNEDEITSLYV 104
           N S  Y  +R F+D  ++  +LYV
Sbjct: 14  NFSCYYSLKRHFQDKHEQSDTLYV 37


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
          protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 28 ISELIDEICKKMDDYVRVYYKSTGKLTIMQLMTKEGGMNPEFSKT 72
          ISEL+D + +  D+ VR  +        + +M +  G   E   T
Sbjct: 6  ISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMT 50


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.135    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,053
Number of Sequences: 429
Number of extensions: 2912
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 192
length of database: 140,377
effective HSP length: 54
effective length of query: 138
effective length of database: 117,211
effective search space: 16175118
effective search space used: 16175118
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 42 (21.0 bits)