GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003259-TA|BGIBMGA003259-PA|IPR001412|Aminoacyl-tRNA
synthetase, class I, IPR000738|WHEP-TRS, IPR002304|Methionyl-tRNA
synthetase, class Ia, IPR009080|Aminoacyl-tRNA synthetase, class 1a,
anticodon-binding, IPR009068|S15/NS1, RNA-binding,
IPR010987|Glutathione S-transferase, C-terminal-like
         (948 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    26   1.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   5.1  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 21   SLSAALGKSPASDVKQVLKSSLEHVNGLLGGHQYVLGDKISAADISIWSTLYPL--TH-- 76
            S  +   K+   D+ Q   S +  +    GGH YV GD   A D  ++ TL  +  TH  
Sbjct: 1037 SRESGFKKTYVQDLIQAEASQIYDMLVYEGGHFYVCGDCTMAED--VYQTLKHIIQTHGE 1094

Query: 77   -NDDLREQYLKELGNIRRWSDAIGG 100
              D   E Y+  L +  R+ + I G
Sbjct: 1095 MTDKQVEAYMLSLRDENRYHEDIFG 1119


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 115 PTGPFGQISALGLPQVANLVSPAGSPDDDAEVQEGPTPEEIE 156
           P  P  +I    L Q  +L     S   DA  ++GPTP + E
Sbjct: 143 PYSPNSKIGRDELSQPGSLNGYGSSDGCDARKKKGPTPRQQE 184


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,860
Number of Sequences: 429
Number of extensions: 10879
Number of successful extensions: 36
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 2
length of query: 948
length of database: 140,377
effective HSP length: 64
effective length of query: 884
effective length of database: 112,921
effective search space: 99822164
effective search space used: 99822164
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)