GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003258-TA|BGIBMGA003258-PA|IPR005467|Histidine kinase,
IPR003594|ATP-binding region, ATPase-like
         (432 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    29   0.076
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    26   0.54 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   5.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   6.6  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   8.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   8.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 29.1 bits (62), Expect = 0.076
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 45  LSSLYSGSKVRLSSLYSGRKTELSALANIMKEIALLPENLLRMPSVGLVNQWYERSF 101
           +SS+ S  ++ L S+   R+T +SA   I +E+ ++PE L+ +    ++N  Y   F
Sbjct: 831 ISSVKSFMELSLRSV-KDRETIISAAEKIAEELKIVPEELVPLEGNLMINNKYALKF 886


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 26.2 bits (55), Expect = 0.54
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 321 MYSTAPQPSKSDSHTVPLAGYGYG-LPISRLYARYFH 356
           ++   P P+  DS  V +   GYG +P ++ + R+F+
Sbjct: 50  LFPPGPPPNNEDSSGVIVGASGYGFVPPNQAFYRFFY 86


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 61  SGRKTELSALANIMKEIALLPENLLRMPSV 90
           +G +T    L  +   ++LLP  L R PSV
Sbjct: 544 NGGETNKQELKRLKSTVSLLPLPLARTPSV 573


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 13/57 (22%), Positives = 23/57 (40%)

Query: 207 SIDPACDVVAVVRDAYENARFLCDRYYLASPELEVLQDGVSSLRPMPIVYVPSHLYH 263
           +++  CDV           R   D   L  PE+ V  DG   L  + +++  ++  H
Sbjct: 327 NVEIKCDVTGTPPPPLVWRRNGADLETLNEPEIRVFNDGSLYLTKVQLIHAGNYTCH 383


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 124 LVHIRNRHADVVQTMAQGVLELKESHEV 151
           LV  R RH+ +  + A   L + E HE+
Sbjct: 427 LVEHRIRHSQIGISRAMSALRILEKHEL 454


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 2   AENFSGSKVRLSSLYSGSKVRLSSLYSGSKVRLSSLYSGSKV--RLSSL 48
           A+N    K+  + + SG+K+ L++  S  K    +  S SK   RL SL
Sbjct: 537 AQNLYAMKMNETYINSGNKISLATSKSFIKANSQTEVSNSKKLDRLDSL 585


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.133    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,627
Number of Sequences: 429
Number of extensions: 5662
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 6
length of query: 432
length of database: 140,377
effective HSP length: 60
effective length of query: 372
effective length of database: 114,637
effective search space: 42644964
effective search space used: 42644964
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)