GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003255-TA|BGIBMGA003255-PA|IPR001507|Endoglin/CD105
antigen
         (375 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   5.6  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   7.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.4  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   9.8  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 7/23 (30%), Positives = 15/23 (65%)

Query: 262 NGMIGYGRKRRSIENSESNKLYE 284
           N  +    ++R+IEN + N++Y+
Sbjct: 433 NNDLSINEEKRTIENEQLNRMYK 455


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 242 VQFKGTVTVCLNECQGVQCSNGMIGYGRKRRSIENSESNKLY 283
           V+F      CL E + +     M+ Y  +  S +   S++LY
Sbjct: 394 VEFDWCAVSCLRELRNLGRKTIMVNYNPETVSTDYDMSDRLY 435


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 101  AISVRCVLSGKHHNLTKRD 119
            A+ V CVL GK H   K D
Sbjct: 1601 AVIVICVLRGKGHGSDKDD 1619


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 160  SGEISVSPGTPLSMEIFLNNESASV 184
            S +I   PGT    E+F+N E   V
Sbjct: 1514 SDKIKFVPGTTSQPEVFVNGEKIVV 1538


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 9.8
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 96  NGNREAISVRCVLSGKHHNLTKRDSRAFPFDFDEPN 131
           N  R  +S R  +   + N  +  ++  PF+ D PN
Sbjct: 21  NDKRIYLSPRTPIKNVYKNNIETKNQLSPFNIDTPN 56


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.135    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,879
Number of Sequences: 429
Number of extensions: 4849
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 5
length of query: 375
length of database: 140,377
effective HSP length: 59
effective length of query: 316
effective length of database: 115,066
effective search space: 36360856
effective search space used: 36360856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)