GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003254-TA|BGIBMGA003254-PA|undefined
         (83 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   1.2  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    19   6.2  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    19   8.3  

>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 1.2
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 3   ICRPPSTGRKQYNEDCTTSSECEITR 28
           I  PP  G   + E+    + C++TR
Sbjct: 167 ISSPPLAGWNDWPEELEPGTPCQLTR 192


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
          protein.
          Length = 149

 Score = 19.4 bits (38), Expect = 6.2
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 44 KSCGYFKEPL 53
          + CG FKEP+
Sbjct: 77 QQCGKFKEPV 86


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 31  CCIMQRRHRQKSRKSC 46
           C + QRR  ++   SC
Sbjct: 274 CSLCQRRFEEQGNYSC 289


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.138    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,611
Number of Sequences: 429
Number of extensions: 981
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 83
length of database: 140,377
effective HSP length: 47
effective length of query: 36
effective length of database: 120,214
effective search space:  4327704
effective search space used:  4327704
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.2 bits)
S2: 37 (19.0 bits)