GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003253-TA|BGIBMGA003253-PA|undefined
         (96 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC071562-1|AAH71562.2| 1235|Homo sapiens NOTCH2 protein protein.       27   7.1  
BC059363-1|AAH59363.1|  305|Homo sapiens ST6 (alpha-N-acetyl-neu...    27   7.1  
AL596222-1|CAH70182.1| 2471|Homo sapiens Notch homolog 2 (Drosop...    27   7.1  
AL512503-1|CAH72483.1| 2471|Homo sapiens Notch homolog 2 (Drosop...    27   7.1  
AL359752-4|CAI18974.1| 2471|Homo sapiens Notch homolog 2 (Drosop...    27   7.1  
AF315356-1|AAG37073.1| 2471|Homo sapiens NOTCH2 protein protein.       27   7.1  
AF308601-1|AAA36377.2| 2471|Homo sapiens NOTCH 2 protein.              27   7.1  

>BC071562-1|AAH71562.2| 1235|Homo sapiens NOTCH2 protein protein.
          Length = 1235

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 67  DEPAHCYSSPCVTNGDC 83
           D+   CYSSPC+ +G C
Sbjct: 606 DQIDECYSSPCLNDGRC 622


>BC059363-1|AAH59363.1|  305|Homo sapiens ST6
           (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,
           3)-N-acetylgalactosaminid protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 4   TAILVLGCLSGAHAWGGLFNRFSSDMLANLGYGRSPYRHYPYGQVEPDEAY 54
           T IL +    G H +G + + +        GY + PY +Y  G+ E DE +
Sbjct: 221 TFILAMDACYGIHVYGMINDTYCKTE----GYRKVPYHYYEQGRDECDEYF 267


>AL596222-1|CAH70182.1| 2471|Homo sapiens Notch homolog 2
           (Drosophila) protein.
          Length = 2471

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 67  DEPAHCYSSPCVTNGDC 83
           D+   CYSSPC+ +G C
Sbjct: 606 DQIDECYSSPCLNDGRC 622


>AL512503-1|CAH72483.1| 2471|Homo sapiens Notch homolog 2
           (Drosophila) protein.
          Length = 2471

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 67  DEPAHCYSSPCVTNGDC 83
           D+   CYSSPC+ +G C
Sbjct: 606 DQIDECYSSPCLNDGRC 622


>AL359752-4|CAI18974.1| 2471|Homo sapiens Notch homolog 2
           (Drosophila) protein.
          Length = 2471

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 67  DEPAHCYSSPCVTNGDC 83
           D+   CYSSPC+ +G C
Sbjct: 606 DQIDECYSSPCLNDGRC 622


>AF315356-1|AAG37073.1| 2471|Homo sapiens NOTCH2 protein protein.
          Length = 2471

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 67  DEPAHCYSSPCVTNGDC 83
           D+   CYSSPC+ +G C
Sbjct: 606 DQIDECYSSPCLNDGRC 622


>AF308601-1|AAA36377.2| 2471|Homo sapiens NOTCH 2 protein.
          Length = 2471

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 67  DEPAHCYSSPCVTNGDC 83
           D+   CYSSPC+ +G C
Sbjct: 606 DQIDECYSSPCLNDGRC 622


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.320    0.138    0.452 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,904,713
Number of Sequences: 224733
Number of extensions: 622776
Number of successful extensions: 1681
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1628
Number of HSP's gapped (non-prelim): 54
length of query: 96
length of database: 73,234,838
effective HSP length: 73
effective length of query: 23
effective length of database: 56,829,329
effective search space: 1307074567
effective search space used: 1307074567
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)