GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003253-TA|BGIBMGA003253-PA|undefined
         (96 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   1.1  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   2.7  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    20   6.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   6.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    19   8.1  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 1.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 48  VEPDEAYEALENNRISNVIDEPAH 71
           V+  + Y+A   NR S   + PAH
Sbjct: 423 VQETDKYDAYYGNRFSGEYEIPAH 446


>AF023666-1|AAC14552.1|  363|Apis mellifera
          sn-glycerol-3-phosphate dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 2.7
 Identities = 13/61 (21%), Positives = 20/61 (32%)

Query: 11 CLSGAHAWGGLFNRFSSDMLANLGYGRSPYRHYPYGQVEPDEAYEALENNRISNVIDEPA 70
          C+ G+  WG    +      AN          Y Y ++   +    + N    NV   P 
Sbjct: 8  CIVGSGNWGSTIAKIIGINAANFSNFEDRVTMYVYEEIINGKKLTEIINETHENVKYLPG 67

Query: 71 H 71
          H
Sbjct: 68 H 68


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 499

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 4  TAILVLGCLSGAHAWGGLFNRFSSDMLANLGYGRSPY 40
          T  L+L   S AH    ++ ++ ++ +  L   RSP+
Sbjct: 46 TKDLILVKKSTAHFVKDIYEKYKNEPMVGLYATRSPF 82


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 6.1
 Identities = 9/30 (30%), Positives = 11/30 (36%)

Query: 55  EALENNRISNVIDEPAHCYSSPCVTNGDCC 84
           E L  N +    D P  C    C +   CC
Sbjct: 418 EYLPGNGVIIPDDPPIGCECKTCNSKTKCC 447


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
          receptor protein.
          Length = 1040

 Score = 19.4 bits (38), Expect = 8.1
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 1  MTATAILVLGCLSGAH 16
          M    ++VLGC   AH
Sbjct: 1  MKLLLLIVLGCTRSAH 16


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.138    0.452 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,470
Number of Sequences: 429
Number of extensions: 1073
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 96
length of database: 140,377
effective HSP length: 49
effective length of query: 47
effective length of database: 119,356
effective search space:  5609732
effective search space used:  5609732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.4 bits)
S2: 38 (19.4 bits)