GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003252-TA|BGIBMGA003252-PA|undefined
         (150 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.33 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.33
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 59  VDLGALETSLLKLYSQALAIVNFLRSLPEYAIGANP 94
           VD+ A     ++L S  L  V   R LPE+ IG NP
Sbjct: 646 VDMYANMIETMELTSLLLTKVAEDRPLPEFYIGGNP 681


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 90  IGANPNTPPANVLNLQGLLSTLVKTIT 116
           IG+ P  PPA+  +L   ++T   T T
Sbjct: 89  IGSRPLHPPASSTSLPATITTTTTTTT 115


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.134    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,653
Number of Sequences: 429
Number of extensions: 584
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 150
length of database: 140,377
effective HSP length: 53
effective length of query: 97
effective length of database: 117,640
effective search space: 11411080
effective search space used: 11411080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)