GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003251-TA|BGIBMGA003251-PA|undefined
         (216 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   3.8  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   8.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   8.9  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 114 KHEPKYVLEAAKFEPKYEIEPYYTGEPVPLSNSKY 148
           +H P+Y      FEP+     +Y       SN  Y
Sbjct: 154 RHHPRYKRPRTTFEPRATDSRHYDRYKEEESNENY 188


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 108 YLQETLKHEPKYVLEAAKFEPK 129
           Y++ +  HE K VLE +K + K
Sbjct: 67  YIKYSHTHEKKLVLERSKTKSK 88


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 166 RSSRSHGALMSPYEAINSSPSFGESFPSVYGSPSKSL 202
           +S RS G+ +S     + S  +    PS +GS +++L
Sbjct: 25  QSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEAL 61


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 166 RSSRSHGALMSPYEAINSSPSFGESFPSVYGSPSKSL 202
           +S RS G+ +S     + S  +    PS +GS +++L
Sbjct: 25  QSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEAL 61


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.131    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,279
Number of Sequences: 429
Number of extensions: 2366
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 216
length of database: 140,377
effective HSP length: 55
effective length of query: 161
effective length of database: 116,782
effective search space: 18801902
effective search space used: 18801902
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 42 (21.0 bits)