GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003250-TA|BGIBMGA003250-PA|IPR004829|Cell surface
antigen
         (189 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    25   0.35 
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   3.2  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               21   7.5  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.9  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 25.4 bits (53), Expect = 0.35
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 117 LQLASPVLNEVFTSPVFSCGCPNP---FSPNVVSPKAVSPSMVPNFITAAFNSP 167
           L L +P +N    SP+ SC CP+     S  ++  + VS ++VP   T   N P
Sbjct: 46  LCLPAPRINS--KSPLLSCACPDGLKLLSDGLMCVEKVSTTIVPT--TQEINKP 95


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)

Query: 117 LQLASPVLNEVFTSPVFSCGCPN 139
           L L +P +N    SP+ SC CP+
Sbjct: 46  LCLPAPRINS--KSPLLSCACPD 66


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 117 LQLASPVLNEVFTSPVFSCGCPNP 140
           L L+  ++   F +PV  C C  P
Sbjct: 10  LFLSVILITSYFVTPVMPCNCKAP 33


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 121 SPVLNEVFTSPVFSCG 136
           SPV N ++ SP+ S G
Sbjct: 262 SPVTNNLYYSPLLSHG 277


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 55  ASRIINQPVITETPCNSVAPRVPSA 79
           ++ +I++PV+      S  PR+ SA
Sbjct: 496 STAVIHEPVVETNSSPSPNPRIASA 520


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,755
Number of Sequences: 429
Number of extensions: 2979
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 189
length of database: 140,377
effective HSP length: 54
effective length of query: 135
effective length of database: 117,211
effective search space: 15823485
effective search space used: 15823485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)