GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003249-TA|BGIBMGA003249-PA|undefined
         (103 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   3.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    19   9.3  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    19   9.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            19   9.3  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 3/20 (15%)

Query: 16  NALSQVLGNPGCACNVRQPY 35
           N +S+ +GN GC   + QPY
Sbjct: 95  NVISEKIGNGGC---LLQPY 111


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 19.4 bits (38), Expect = 9.3
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 5   YFMCLLGLFAQNALSQVL 22
           YF C++ + A + +S +L
Sbjct: 297 YFNCIMFMVASSVVSTIL 314


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
          protein-1 protein.
          Length = 128

 Score = 19.4 bits (38), Expect = 9.3
 Identities = 6/14 (42%), Positives = 7/14 (50%)

Query: 45 CGGPAGYGDVAVSG 58
          CGGP  Y  +   G
Sbjct: 69 CGGPQNYLGICAEG 82


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 19.4 bits (38), Expect = 9.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 47 GPAGYGDVAVS 57
          GP G+G V VS
Sbjct: 53 GPVGFGGVQVS 63


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.143    0.490 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,380
Number of Sequences: 429
Number of extensions: 1469
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 103
length of database: 140,377
effective HSP length: 49
effective length of query: 54
effective length of database: 119,356
effective search space:  6445224
effective search space used:  6445224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.4 bits)
S2: 38 (19.4 bits)