GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003247-TA|BGIBMGA003247-PA|undefined
         (336 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           28   0.13 
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    25   1.2  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    24   2.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    24   2.2  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   3.8  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 193 SNILNSLQNVAAHNLINTNLVNMDAAQFGQSNLIQTTNFPDHLNHLYNSNVPLAIRDLPN 252
           S++ N    +++H+ +  + +N D+++F +  + +    P++ NHLY S      RD  +
Sbjct: 46  SSLRNYKTLISSHDELPGH-INCDSSKFEEDLMNKLPTTPEYNNHLYGSTPD--SRDYFS 102

Query: 253 QPF--GLHVLADGLN 265
           +PF   LH    G N
Sbjct: 103 RPFEKRLHSRLPGRN 117


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 195 ILNSLQNVAAHNLINTNLVNMDAAQFGQSNLIQTTNFPDHLNHLYNSNVPLAI----RDL 250
           I++SL N   HN  N N  N +   +  +N         ++N++    VP+ +     + 
Sbjct: 81  IISSLSNKTIHNNNNYNNNNYNNYNYNNNNYNNYKKLYYNINYIEQIPVPVPVPIYCGNF 140

Query: 251 PNQPFG 256
           P +P G
Sbjct: 141 PPRPMG 146


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 62  NFNCANMVSKNVNSNGGFMNNLANFYSKM 90
           N+  +N  + N N N  + NN  N Y K+
Sbjct: 88  NYKYSNYNNYNNNYNNNYNNNYNNNYKKL 116


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 62  NFNCANMVSKNVNSNGGFMNNLANFYSKM 90
           N+  +N  + N N N  + NN  N Y K+
Sbjct: 88  NYKYSNYNNYNNNYNNNYNNNYNNNYKKL 116


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 186 IAGNPPNSNILNSLQNVAAHNLINTNLVNMDAAQFGQSNLIQTTNFPDHLN 236
           +A +P  +N+  S   +A+H L   N      +QFG++N +Q     D LN
Sbjct: 254 MALSPVTNNLYYS--PLASHGLYYVNTAPFMKSQFGENN-VQYQGSEDILN 301


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.133    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,340
Number of Sequences: 429
Number of extensions: 3998
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 5
length of query: 336
length of database: 140,377
effective HSP length: 58
effective length of query: 278
effective length of database: 115,495
effective search space: 32107610
effective search space used: 32107610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)