GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003246-TA|BGIBMGA003246-PA|undefined
         (168 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   0.69 
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    23   2.1  
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    22   3.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   4.8  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   6.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.4  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 0.69
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 58  RAHAKGSVRIVTHFGPNYGRKPWPFFMRTGPLPRYINSSYIW-PLRVIEIQPQP 110
           RA + G ++++  F PN+     P+F ++    +  +  Y+W   R++    QP
Sbjct: 108 RAKSLG-LKVILDFVPNHSSHEHPWFKKSVQRIKPYDEYYVWRDARIVNGTRQP 160


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 4/28 (14%)

Query: 73  PNYGRKPWPFFMRTGPLPRYINSSYIWP 100
           P  GR+P+P F   GP     N    WP
Sbjct: 27  PQPGRRPFPTFPGQGP----FNPKIKWP 50


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
          protein.
          Length = 33

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 73 PNYGRKPWPFFMRTGP 88
          P  GR+P+P F   GP
Sbjct: 13 PQPGRRPFPTFPGQGP 28


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 45 KKASVPKTVPFSGRAHAKGSVR 66
          KK  + +T    GR H KG  R
Sbjct: 71 KKTDIEETGRGKGRGHGKGGSR 92


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 7   ILLKEIVVTQQTET 20
           +L+KE+VVT   ET
Sbjct: 232 VLIKELVVTPNRET 245


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 5/19 (26%), Positives = 11/19 (57%)

Query: 81  PFFMRTGPLPRYINSSYIW 99
           PF      +P +++S ++W
Sbjct: 396 PFLKNPDAIPAFLSSLFLW 414


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.143    0.469 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,902
Number of Sequences: 429
Number of extensions: 2947
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 168
length of database: 140,377
effective HSP length: 53
effective length of query: 115
effective length of database: 117,640
effective search space: 13528600
effective search space used: 13528600
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 41 (20.6 bits)