GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003243-TA|BGIBMGA003243-PA|IPR008560|Protein of unknown
function DUF842, eukaryotic
         (147 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   1.7  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   5.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.0  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 6   KYRIEQEMTNLVNELDRSYLRKMQGDMHRCASKCCDDTQSSLERVHGCIEN 56
           K   E+E T  +N  +  YL   +  M    +K C D+     ++   +EN
Sbjct: 160 KQNKEEEQT--INRKNSDYLDNQEVSMENTENKSCTDSDIEKYKMFCNLEN 208


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 111 EKCAVKCVDKHM 122
           EKC+  CV+K M
Sbjct: 20  EKCSYSCVNKSM 31


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 21 DRSYLRKMQGDMHRCASKCC 40
          + SYL +    +  CASK C
Sbjct: 68 EESYLAESSRSIDPCASKYC 87


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.131    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,142
Number of Sequences: 429
Number of extensions: 1988
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 147
length of database: 140,377
effective HSP length: 52
effective length of query: 95
effective length of database: 118,069
effective search space: 11216555
effective search space used: 11216555
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)