GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003239-TA|BGIBMGA003239-PA|undefined
         (142 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   2.2  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    20   8.8  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    20   8.8  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    20   8.8  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    20   8.8  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    20   8.8  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    20   8.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    20   8.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    20   8.8  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 125 PNYPQNFAHQQSFTQVH 141
           P Y Q F HQQ F+  +
Sbjct: 7   PKYHQQFHHQQLFSSAN 23


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 6 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 74 TSAWSWFPWPRSNSQNSRCRMGGV 97
          T+AW    W   N Q +    GGV
Sbjct: 35 TNAWLKLEWVDYNLQWNESEYGGV 58


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 5 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 74 TSAWSWFPWPRSNSQNSRCRMGGV 97
          T+AW    W   N Q +    GGV
Sbjct: 35 TNAWLKLEWVDYNLQWNESEYGGV 58


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 4 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 74 TSAWSWFPWPRSNSQNSRCRMGGV 97
          T+AW    W   N Q +    GGV
Sbjct: 35 TNAWLKLEWVDYNLQWNESEYGGV 58


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 3 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 74 TSAWSWFPWPRSNSQNSRCRMGGV 97
          T+AW    W   N Q +    GGV
Sbjct: 35 TNAWLKLEWVDYNLQWNESEYGGV 58


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 2 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 74 TSAWSWFPWPRSNSQNSRCRMGGV 97
          T+AW    W   N Q +    GGV
Sbjct: 35 TNAWLKLEWVDYNLQWNESEYGGV 58


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 1 protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 74 TSAWSWFPWPRSNSQNSRCRMGGV 97
          T+AW    W   N Q +    GGV
Sbjct: 35 TNAWLKLEWVDYNLQWNESEYGGV 58


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 74  TSAWSWFPWPRSNSQNSRCRMGGV 97
           T+AW    W   N Q +    GGV
Sbjct: 103 TNAWLKLEWVDYNLQWNESEYGGV 126


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 74  TSAWSWFPWPRSNSQNSRCRMGGV 97
           T+AW    W   N Q +    GGV
Sbjct: 103 TNAWLKLEWVDYNLQWNESEYGGV 126


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.133    0.475 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,273
Number of Sequences: 429
Number of extensions: 2637
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 142
length of database: 140,377
effective HSP length: 52
effective length of query: 90
effective length of database: 118,069
effective search space: 10626210
effective search space used: 10626210
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)