GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003238-TA|BGIBMGA003238-PA|IPR007763|NADH:ubiquinone
oxidoreductase 17.2 kD subunit
         (145 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   0.42 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   2.2  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   5.2  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.6 bits (51), Expect = 0.42
 Identities = 11/37 (29%), Positives = 16/37 (43%)

Query: 47  DKYGNKYYENPRFFYSRNRWVEYSDKYYLNYDGSQVP 83
           + Y N  Y N    Y+ N +  Y   YY   +  Q+P
Sbjct: 327 NNYNNNNYNNNYNNYNNNNYNNYKKLYYNIINIEQIP 363


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 10/43 (23%), Positives = 18/43 (41%)

Query: 100 QDPSRPHYKWMADHTENLSGTTAQYVPYSTTRPKVEAWEPKRK 142
           +DP R  Y+W    +   S T   ++P +     +     KR+
Sbjct: 419 RDPERTPYQWDNSTSAGFSQTNKTWLPVNENYKSLNLAAQKRE 461


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 62  SRNRWVEYSDKYYLNYDGSQVPAEWFGWLHYKTD 95
           +R R +E++   + N   S VP   FG  +++TD
Sbjct: 201 TRRRALEHTLDRFHNDKYSNVPYFLFGDFNFRTD 234


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.136    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,846
Number of Sequences: 429
Number of extensions: 3051
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 145
length of database: 140,377
effective HSP length: 52
effective length of query: 93
effective length of database: 118,069
effective search space: 10980417
effective search space used: 10980417
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
S2: 40 (20.2 bits)