Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA003237-TA|BGIBMGA003237-PA|IPR000467|D111/G-patch
(330 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 42 1e-04
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 40 6e-04
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 39 0.001
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 38 0.003
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo... 37 0.003
SPCC1442.13c |||RNA-binding protein, G-pathc type|Schizosaccharo... 29 1.2
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar... 28 2.1
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 27 2.8
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 26 8.5
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 26 8.5
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 41.9 bits (94), Expect = 1e-04
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 6 KQLEKYGWTDGKGLGKHENGISEALKPKLKRSVTGIGH 43
K L GW G GLG +ENGI EA++P + G+G+
Sbjct: 496 KMLNSMGWNKGSGLGTNENGIKEAIQPTMYLPGVGLGN 533
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 39.5 bits (88), Expect = 6e-04
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 3 FARKQLEKYGWTDGKGLGKHENGISEALKPKLKRSVTGIG 42
F K LEK G+ G+GLG + GI+E ++ KL+ G+G
Sbjct: 118 FGAKMLEKMGYKQGQGLGANAEGIAEPVQSKLRPERVGLG 157
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 38.7 bits (86), Expect = 0.001
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 6 KQLEKYGWTDGKGLGKHENGISEALKPKLKRSVTGIGHDPAAEFNEHWWSVL 57
K L YGW +G GLG+ ++G +K LK GIG A N+ WS L
Sbjct: 31 KLLSSYGWVNGNGLGEKQHGRIHNIKVSLKDDTLGIG---AKATNDLEWSGL 79
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 37.5 bits (83), Expect = 0.003
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 5 RKQLEKYGWTDGKGLGKHEN-GISEALKPKLKRSVTGIG 42
R+ LEK GW GKGLG EN G ++L+ +K S +G+G
Sbjct: 657 RRLLEKLGWYAGKGLGHPENEGSKDSLRAIVKVSRSGLG 695
>SPAC2G11.04 |||RNA-binding protein, G-patch type
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 301
Score = 37.1 bits (82), Expect = 0.003
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 4 ARKQLEKYGWTDGKGLGKHENGISEALKPKLKRSVTGIGH 43
A K L++ GW +G+GLG+H GI L ++ VT H
Sbjct: 256 ALKMLQRCGWKEGQGLGQHNQGIINPLHVEISGFVTETKH 295
>SPCC1442.13c |||RNA-binding protein, G-pathc
type|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 5 RKQLEKYGWTDGKGLGKHENGISE---ALKPKL 34
++ LE GW+ GKGLG G+ + A+K KL
Sbjct: 150 KQLLEMMGWSRGKGLGSENQGMVDPVVAVKEKL 182
>SPCC1223.02 |nmt1|thi3|no message in thiamine
Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 89 TWQIDKKPKNGKGKQYSENFIRTEVLTKGG 118
TW++D K+ GKQ + I+ E+ KGG
Sbjct: 302 TWELDPDEKDPMGKQEAIAEIQDEIKQKGG 331
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 183 KYNGYSHAKNKGDEQIIEDLSLQSEEAE 210
+Y+ S KN+ D+QI+E L+ S++A+
Sbjct: 346 QYSNPSPEKNENDDQILEHLARNSQKAQ 373
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 227 GMTVENSVVTASEVI-ESREIENVTTSVENIEDLESV 262
G+TV S E+I E +ENV+ S NI+ + +V
Sbjct: 129 GVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNV 165
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 227 GMTVENSVVTASEVI-ESREIENVTTSVENIEDLESV 262
G+TV S E+I E +ENV+ S NI+ + +V
Sbjct: 129 GVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNV 165
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.308 0.126 0.356
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,225,821
Number of Sequences: 5004
Number of extensions: 42384
Number of successful extensions: 70
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 62
Number of HSP's gapped (non-prelim): 10
length of query: 330
length of database: 2,362,478
effective HSP length: 73
effective length of query: 257
effective length of database: 1,997,186
effective search space: 513276802
effective search space used: 513276802
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 54 (25.8 bits)
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